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ptr1 E3 ubiquitin-protein ligase [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2542537, updated on 18-Sep-2024

Summary

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Official Symbol
ptr1
Official Full Name
E3 ubiquitin-protein ligase
Primary source
PomBase:SPAC19D5.04
Locus tag
SPOM_SPAC19D5.04
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See ptr1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (5208640..5218739)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase Pyp2 Neighboring gene ncRNA Neighboring gene protein Emc10 Neighboring gene ncRNA Neighboring gene terminal uridylyltransferase Cid1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene U3 snoRNP-associated protein Imp3 Neighboring gene DNA replication factor C complex subunit Ctf8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mudi, a web tool for identifying mutations by bioinformatics analysis of whole-genome sequence. Iida N, et al. Genes Cells, 2014 Jun. PMID 24766403
  2. The fission yeast ptr1+ gene involved in nuclear mRNA export encodes a putative ubiquitin ligase. Andoh T, et al. Biochem Biophys Res Commun, 2004 May 14. PMID 15094387
  3. RNA interference regulates the cell cycle checkpoint through the RNA export factor, Ptr1, in fission yeast. Iida T, et al. Biochem Biophys Res Commun, 2012 Oct 12. PMID 22989756
  4. Characterization of Thi9, a novel thiamine (Vitamin B1) transporter from Schizosaccharomyces pombe. Vogl C, et al. J Biol Chem, 2008 Mar 21. PMID 18201975
  5. A context-dependent and disordered ubiquitin-binding motif. Dreier JE, et al. Cell Mol Life Sci, 2022 Aug 16. PMID 35974206, Free PMC Article

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in rRNA processing ISO
Inferred from Sequence Orthology
more info
  
involved_in ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus HDA PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
E3 ubiquitin-protein ligase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    5208640..5218739
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001020331.3 → NP_594902.1  E3 ubiquitin-protein ligase [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_594902.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O13834
    Conserved Domains (6) summary
    COG5021
    Location:2314 → 3227
    HUL4; Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
    cd00078
    Location:2870 → 3225
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    pfam06012
    Location:96 → 367
    DUF908; Domain of Unknown Function (DUF908)
    pfam06025
    Location:436 → 735
    DUF913; Domain of Unknown Function (DUF913)
    pfam14377
    Location:2267 → 2347
    DUF4414; Domain of unknown function (DUF4414)
    cl01319
    Location:1930 → 2018
    HARE-HTH; HB1, ASXL, restriction endonuclease HTH domain
Nucleotide Protein
Heading Accession and Version

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