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ssr2 SWI/SNF and RSC complex subunit Ssr2 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2541851, updated on 18-Sep-2024

Summary

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Official Symbol
ssr2
Official Full Name
SWI/SNF and RSC complex subunit Ssr2
Primary source
PomBase:SPAC23H3.10
Locus tag
SPOM_SPAC23H3.10
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See ssr2 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003424.3 (2511081..2512846)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene threonine aldolase Gly1 Neighboring gene ncRNA Neighboring gene tRNA-Cys Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene glucosidase Neighboring gene ncRNA Neighboring gene hydrogen/potassium transport protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Fission yeast SWI/SNF and RSC complexes show compositional and functional differences from budding yeast. Monahan BJ, et al. Nat Struct Mol Biol, 2008 Aug. PMID 18622392, Free PMC Article
  2. Rbm10 facilitates heterochromatin assembly via the Clr6 HDAC complex. Weigt M, et al. Epigenetics Chromatin, 2021 Jan 19. PMID 33468217, Free PMC Article
  3. Epe1 recruits BET family bromodomain protein Bdf2 to establish heterochromatin boundaries. Wang J, et al. Genes Dev, 2013 Sep 1. PMID 24013502, Free PMC Article
  4. Systematic analysis reveals the prevalence and principles of bypassable gene essentiality. Li J, et al. Nat Commun, 2019 Mar 1. PMID 30824696, Free PMC Article
  5. Predicting the fission yeast protein interaction network. Pancaldi V, et al. G3 (Bethesda), 2012 Apr. PMID 22540037, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables DNA binding ISM
Inferred from Sequence Model
more info
  
enables histone binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of transcription by RNA polymerase II TAS
Traceable Author Statement
more info
 PubMed 
involved_in transcription initiation-coupled chromatin remodeling IC
Inferred by Curator
more info
  
Component Evidence Code Pubs
part_of RSC-type complex IDA
Inferred from Direct Assay
more info
 PubMed 
part_of SWI/SNF complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of SWI/SNF complex IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in cytoplasm HDA PubMed 

General protein information

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Preferred Names
SWI/SNF and RSC complex subunit Ssr2

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    2511081..2512846
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001019229.3 → NP_593800.1  SWI/SNF and RSC complex subunit Ssr2 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593800.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O14470, P78877
    Conserved Domains (5) summary
    COG5259
    Location:1 → 503
    RSC8; RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
    cd00167
    Location:249 → 291
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    cd02336
    Location:192 → 224
    ZZ_RSC8; Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and ...
    pfam04433
    Location:21 → 106
    SWIRM; SWIRM domain
    pfam16495
    Location:369 → 449
    SWIRM-assoc_1; SWIRM-associated region 1
Nucleotide Protein
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