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rpc10 DNA-directed RNA polymerase subunit Rpc10 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540793, updated on 18-Sep-2024

Summary

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Official Symbol
rpc10
Official Full Name
DNA-directed RNA polymerase subunit Rpc10
Primary source
PomBase:SPBC19C2.03
Locus tag
SPOM_SPBC19C2.03
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
rpb12
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Genomic context

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See rpc10 in Genome Data Viewer
Location:
chromosome: II
Exon count:
2
Sequence:
Chromosome: II; NC_003423.3 (1675639..1676188)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ATP-dependent RNA helicase Cdc28 Neighboring gene DNA methyltransferase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ubiquitin hydrolase Ubp11

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. [Molecular cloning and characterization of cDNA of the rpc10+ gene encoding the smallest subunit of nuclear RNA polymerases of Schizosaccharomyces pombe]. Shpakovskiĭ GV, et al. Bioorg Khim, 1997 May. PMID 9290054
  2. Location of subunit-subunit contact sites on RNA polymerase II subunit 3 from the fission yeast Schizosaccharomyces pombe. Yasui K, et al. Biochemistry, 1998 Apr 21. PMID 9548938
  3. Elongation/Termination Factor Exchange Mediated by PP1 Phosphatase Orchestrates Transcription Termination. Kecman T, et al. Cell Rep, 2018 Oct 2. PMID 30282034, Free PMC Article
  4. Gene organization and protein sequence of the small subunits of Schizosaccharomyces pombe RNA polymerase II. Sakurai H, et al. Gene, 1997 Sep 1. PMID 9322754
  5. RNA Pol II subunit Rpb7 promotes centromeric transcription and RNAi-directed chromatin silencing. Djupedal I, et al. Genes Dev, 2005 Oct 1. PMID 16204182, Free PMC Article

See all (20) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
contributes_to DNA-directed 5'-3' RNA polymerase activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
contributes_to RNA polymerase I activity IBA
Inferred from Biological aspect of Ancestor
more info
  
contributes_to RNA polymerase II activity IBA
Inferred from Biological aspect of Ancestor
more info
  
contributes_to RNA polymerase III activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in transcription by RNA polymerase I IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in transcription by RNA polymerase II IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in transcription by RNA polymerase III IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in transcription elongation by RNA polymerase I EXP
Inferred from Experiment
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase I complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of RNA polymerase I complex IDA
Inferred from Direct Assay
more info
 PubMed 
part_of RNA polymerase I complex IGI
Inferred from Genetic Interaction
more info
 PubMed 
part_of RNA polymerase II, core complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of RNA polymerase II, core complex IDA
Inferred from Direct Assay
more info
 PubMed 
part_of RNA polymerase II, core complex IGI
Inferred from Genetic Interaction
more info
 PubMed 
part_of RNA polymerase III complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of RNA polymerase III complex IGI
Inferred from Genetic Interaction
more info
 PubMed 
is_active_in cytosol HDA PubMed 
is_active_in nucleolus HDA PubMed 
is_active_in nucleus HDA PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase subunit Rpc10

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    1675639..1676188
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021585.3 → NP_595688.1  DNA-directed RNA polymerase subunit Rpc10 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595688.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O14457, P48011
    Conserved Domains (1) summary
    smart00659
    Location:20 → 63
    RPOLCX; RNA polymerase subunit CX
Nucleotide Protein
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