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sec6102 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540769, updated on 22-Aug-2024

Summary

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Official Symbol
sec6102
Primary source
PomBase:SPBC19G7.17
Locus tag
SPOM_SPBC19G7.17
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
SPBC36B7.01
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Genomic context

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Location:
chromosome: II
Exon count:
6
Sequence:
Chromosome: II; NC_003423.3 (2382450..2384668)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene nucleoporin Nup44 Neighboring gene ncRNA Neighboring gene TOM complex subunit Tom5 Neighboring gene ncRNA Neighboring gene transcription elongation factor complex subunit Iws1 Neighboring gene ncRNA Neighboring gene ER to Golgi ceramide transport protein, lipocalin superfamily Svf2 Neighboring gene ncRNA Neighboring gene translocation subcomplex subunit Sec63

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Regulation of mRNA Levels by Decay-Promoting Introns that Recruit the Exosome Specificity Factor Mmi1. Kilchert C, et al. Cell Rep, 2015 Dec 22. PMID 26670050, Free PMC Article
  2. A central role for TOR signalling in a yeast model for juvenile CLN3 disease. Bond ME, et al. Microb Cell, 2015 Nov 11. PMID 28357272, Free PMC Article
  3. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables protein transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables ribosome binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables signal sequence binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in SRP-dependent cotranslational protein targeting to membrane, translocation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in post-translational protein targeting to membrane, translocation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein insertion into ER membrane IC
Inferred by Curator
more info
  
Component Evidence Code Pubs
part_of Sec61 translocon complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
translocon subunit Sec61-like protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    2382450..2384668
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001021890.3 → NP_595983.2  translocon subunit Sec61-like protein [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_595983.2

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O42965, Q9HGN9
    Conserved Domains (3) summary
    PTZ00219
    Location:3 → 465
    PTZ00219; Sec61 alpha subunit; Provisional
    pfam00344
    Location:77 → 453
    SecY; SecY translocase
    pfam10559
    Location:41 → 73
    Plug_translocon; Plug domain of Sec61p
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials