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nam9 mitochondrial 37S ribosomal protein uS4m [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2540056, updated on 18-Sep-2024

Summary

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Official Symbol
nam9
Official Full Name
mitochondrial 37S ribosomal protein uS4m
Primary source
PomBase:SPBC13G1.01c
Locus tag
SPOM_SPBC13G1.01C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See nam9 in Genome Data Viewer
Location:
chromosome: II
Exon count:
2
Sequence:
Chromosome: II; NC_003423.3 (3728195..3729349, complement)

Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene RNA helicase Neighboring gene putative RNA-binding protein Neighboring gene ncRNA Neighboring gene mannose-1-phosphate guanyltransferase Neighboring gene ncRNA Neighboring gene protein Pex14

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcription and chromatin-based surveillance mechanism controls suppression of cryptic antisense transcription. Heo DH, et al. Cell Rep, 2021 Sep 7. PMID 34496258, Free PMC Article
  2. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
  3. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables rRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in mitochondrial translation ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in ribosomal small subunit biogenesis IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of mitochondrial small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in mitochondrion HDA PubMed 

General protein information

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Preferred Names
mitochondrial 37S ribosomal protein uS4m

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003423.3 Reference assembly

    Range
    3728195..3729349 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022471.3 → NP_596550.1  mitochondrial 37S ribosomal protein uS4m [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_596550.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O60063, P78902
    Conserved Domains (2) summary
    smart00363
    Location:96 → 150
    S4; S4 RNA-binding domain
    COG0522
    Location:1 → 264
    RpsD; Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
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