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vsl1 SNARE protein Vam7 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2538847, updated on 14-Nov-2024

Summary

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Official Symbol
vsl1
Official Full Name
SNARE protein Vam7
Primary source
PomBase:SPCC594.06c
Locus tag
SPOM_SPCC594.06C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
vam7
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Genomic context

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See vsl1 in Genome Data Viewer
Location:
chromosome: III
Exon count:
2
Sequence:
Chromosome: III; NC_003421.2 (365598..367011, complement)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene steroid oxidoreductase superfamily protein Neighboring gene ncRNA Neighboring gene Set1C PHD finger subunit Spf1 Neighboring gene bouquet formation protein Bqt3 Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Vsl1p cooperates with Fsv1p for vacuolar protein transport and homotypic fusion in Schizosaccharomyces pombe. Hosomi A, et al. Microbiology (Reading), 2015 Jan. PMID 25378562
  2. A genetic screen to discover pathways affecting cohesin function in Schizosaccharomyces pombe identifies chromatin effectors. Chen Z, et al. G3 (Bethesda), 2012 Oct. PMID 23050226, Free PMC Article
  3. A central role for TOR signalling in a yeast model for juvenile CLN3 disease. Bond ME, et al. Microb Cell, 2015 Nov 11. PMID 28357272, Free PMC Article
  4. Genetic interactions and functional analyses of the fission yeast gsk3 and amk2 single and double mutants defective in TORC1-dependent processes. Rallis C, et al. Sci Rep, 2017 Mar 10. PMID 28281664, Free PMC Article
  5. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables SNAP receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables SNARE binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables phosphatidylinositol binding ISM
Inferred from Sequence Model
more info
  
Process Evidence Code Pubs
involved_in Golgi to vacuole transport IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in intracellular protein transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in vacuole fusion IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in vesicle docking IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in vesicle fusion IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of SNARE complex IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in endomembrane system IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in fungal-type vacuole HDA PubMed 
is_active_in fungal-type vacuole membrane IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in late endosome IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
SNARE protein Vam7

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    365598..367011 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022785.3 → NP_587792.1  SNARE protein Vam7 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_587792.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O74509
    Conserved Domains (2) summary
    cd06897
    Location:3 → 111
    PX_SNARE; The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi
    cd15858
    Location:281 → 339
    SNARE_VAM7; SNARE motif of VAM7
Nucleotide Protein
Heading Accession and Version

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