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sec231 COPII cargo receptor subunit Sec23a [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2538699, updated on 18-Sep-2024

Summary

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Official Symbol
sec231
Official Full Name
COPII cargo receptor subunit Sec23a
Primary source
PomBase:SPCC31H12.07
Locus tag
SPOM_SPCC31H12.07
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
Also known as
sec23a; SPCC5E4.01
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Genomic context

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See sec231 in Genome Data Viewer
Location:
chromosome: III
Exon count:
4
Sequence:
Chromosome: III; NC_003421.2 (634267..636996)

Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene protein mug111 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene CCR4-Not complex subunit Ccr4 Neighboring gene ncRNA Neighboring gene transcription initiation factor TFIID subunit 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003421.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The fission yeast FLCN/FNIP complex augments TORC1 repression or activation in response to amino acid (AA) availability. Calvo IA, et al. iScience, 2021 Nov 19. PMID 34805795, Free PMC Article
  2. Chromatin remodeller Fun30(Fft3) induces nucleosome disassembly to facilitate RNA polymerase II elongation. Lee J, et al. Nat Commun, 2017 Feb 20. PMID 28218250, Free PMC Article
  3. A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human. Vo TV, et al. Cell, 2016 Jan 14. PMID 26771498, Free PMC Article
  4. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
  5. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables GTPase activator activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables zinc ion binding ISM
Inferred from Sequence Model
more info
  
Process Evidence Code Pubs
involved_in COPII-coated vesicle cargo loading IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in ERAD pathway ISO
Inferred from Sequence Orthology
more info
  
involved_in intracellular protein transport IC
Inferred by Curator
more info
  
involved_in reticulophagy ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
part_of COPII vesicle coat IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in endoplasmic reticulum exit site IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
COPII cargo receptor subunit Sec23a

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003421.2 Reference assembly

    Range
    634267..636996
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001022892.3 → NP_587900.1  COPII cargo receptor subunit Sec23a [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_587900.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    O74873
    Conserved Domains (6) summary
    cd11287
    Location:604 → 725
    Sec23_C; C-terminal Actin depolymerization factor-homology domain of Sec23
    COG5047
    Location:1 → 759
    SEC23; Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion]
    cd01478
    Location:120 → 384
    Sec23-like; Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes ...
    pfam04810
    Location:53 → 91
    zf-Sec23_Sec24; Sec23/Sec24 zinc finger
    pfam04815
    Location:526 → 609
    Sec23_helical; Sec23/Sec24 helical domain
    pfam08033
    Location:397 → 500
    Sec23_BS; Sec23/Sec24 beta-sandwich domain
Nucleotide Protein
Heading Accession and Version

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