U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CRMA cardiomyocyte maturation associated lncRNA [ Homo sapiens (human) ]

Gene ID: 253868, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
CRMAprovided by HGNC
Official Full Name
cardiomyocyte maturation associated lncRNAprovided by HGNC
Primary source
HGNC:HGNC:26393
See related
AllianceGenome:HGNC:26393
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CARMA; C20orf200; NCRNA00335; MIR1-1HG-AS1; C20orf166-AS1
Expression
Biased expression in heart (RPKM 4.0), prostate (RPKM 2.7) and 8 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
20q13.33
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (62543070..62551561, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (64341587..64350086, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (61141438..61148768, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18203 Neighboring gene uncharacterized LOC124904947 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61071135-61071640 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61071641-61072147 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61075123-61075623 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18204 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61086501-61087310 Neighboring gene uncharacterized LOC105376995 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:61147747-61148622 Neighboring gene MIR1-1 host gene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61153927-61154798 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61155669-61156540 Neighboring gene microRNA 1-1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61158329-61158846 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61158847-61159365 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61159366-61159883 Neighboring gene microRNA 133a-2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The conserved long non-coding RNA CARMA regulates cardiomyocyte differentiation. Kay M, et al. Cardiovasc Res, 2022 Jul 27. PMID 34459880
  2. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. Eeles RA, et al. Nat Genet, 2013 Apr. PMID 23535732, Free PMC Article
  3. Gsk3β and Tomm20 are substrates of the SCFFbxo7/PARK15 ubiquitin ligase associated with Parkinson's disease. Teixeira FR, et al. Biochem J, 2016 Oct 15. PMID 27503909, Free PMC Article
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The conserved long non-coding RNA CARMA regulates cardiomyocyte differentiation.
    Title: The conserved long non-coding RNA CARMA regulates cardiomyocyte differentiation.
Submit: New GeneRIF Correction

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.
EBI GWAS Catalog

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Markers

Other Names

  • C20orf166 antisense RNA 1 (non-protein coding)
  • MIR1-1HG antisense RNA 1

Clone Names

  • FLJ30313, MGC138143, DKFZp313D1938

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033263.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC161429, AK056546, AL449263, AL832097, DA722400

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    62543070..62551561 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    64341587..64350086 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_152757.1: Suppressed sequence

    Description
    NM_152757.1: This RefSeq was permanently suppressed because currently there is insufficient support for the protein.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Miscellaneous