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Chrm4 cholinergic receptor, muscarinic 4 [ Rattus norvegicus (Norway rat) ]

Gene ID: 25111, updated on 14-Nov-2024

Summary

Official Symbol
Chrm4provided by RGD
Official Full Name
cholinergic receptor, muscarinic 4provided by RGD
Primary source
RGD:2344
See related
EnsemblRapid:ENSRNOG00000017556 AllianceGenome:RGD:2344
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
M4
Summary
Enables guanyl-nucleotide exchange factor activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting G protein-coupled acetylcholine receptor signaling pathway; and chemical synaptic transmission. Located in several cellular components, including asymmetric synapse; neuronal cell body; and sarcolemma. Is active in glutamatergic synapse; postsynaptic density membrane; and presynaptic membrane. Biomarker of congestive heart failure. Orthologous to human CHRM4 (cholinergic receptor muscarinic 4). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Brain (RPKM 24.8) and Testes (RPKM 1.9) See more
Orthologs
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Genomic context

See Chrm4 in Genome Data Viewer
Location:
3q24
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (98349080..98356821)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (77893425..77901166)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (80833272..80841165)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene harbinger transposase derived 1 Neighboring gene autophagy and beclin 1 regulator 1 Neighboring gene uncharacterized LOC134486121 Neighboring gene ATP synthase membrane subunit c locus 1, pseudogene 1 Neighboring gene diacylglycerol kinase zeta Neighboring gene midkine Neighboring gene cAMP responsive element binding protein 3-like 1

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in asymmetric synapse IDA
Inferred from Direct Assay
more info
PubMed 
located_in axon terminus IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in dendrite IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in glutamatergic synapse IDA
Inferred from Direct Assay
more info
PubMed 
located_in membrane ISO
Inferred from Sequence Orthology
more info
 
located_in neuronal cell body IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in postsynaptic density membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in presynaptic membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in sarcolemma IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in synapse IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
muscarinic acetylcholine receptor M4
Names
cholinergic receptor, muscarin 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_031547.1NP_113735.1  muscarinic acetylcholine receptor M4

    See identical proteins and their annotated locations for NP_113735.1

    Status: VALIDATED

    Source sequence(s)
    CR472483, DV213670, M16409
    UniProtKB/Swiss-Prot
    P08485
    UniProtKB/TrEMBL
    A6HNE6, G3V894
    Related
    ENSRNOP00000023586.4, ENSRNOT00000023583.7
    Conserved Domains (1) summary
    cd15298
    Location:32463
    7tmA_mAChR_M4; muscarinic acetylcholine receptor subtype M4, member of the class A family of seven-transmembrane G protein-coupled receptors

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    98349080..98356821
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)