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Plcb4 phospholipase C, beta 4 [ Rattus norvegicus (Norway rat) ]

Gene ID: 25031, updated on 2-Nov-2024

Summary

Official Symbol
Plcb4provided by RGD
Official Full Name
phospholipase C, beta 4provided by RGD
Primary source
RGD:3345
See related
EnsemblRapid:ENSRNOG00000033119 AllianceGenome:RGD:3345
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Beta4aa; RATBETA4AA
Summary
Enables mitogen-activated protein kinase binding activity. Involved in negative regulation of potassium ion transport. Predicted to be located in dendrite; nucleus; and plasma membrane. Predicted to be active in several cellular components, including glutamatergic synapse; parallel fiber to Purkinje cell synapse; and postsynaptic density. Orthologous to human PLCB4 (phospholipase C beta 4). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Lung (RPKM 141.5), Heart (RPKM 133.5) and 9 other tissues See more
Orthologs
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Genomic context

See Plcb4 in Genome Data Viewer
Location:
3q36
Exon count:
45
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (143405721..143775129)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (122952965..123322522)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (128601163..128971720)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene mRNA turnover protein 4 homolog Neighboring gene uncharacterized LOC120101678 Neighboring gene uncharacterized LOC134486450 Neighboring gene U6 spliceosomal RNA Neighboring gene lysosomal-associated membrane protein family, member 5

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

General gene information

Markers

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 
enables mitogen-activated protein kinase binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables phosphatidylinositol phospholipase C activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables phosphatidylinositol phospholipase C activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in dendrite IEA
Inferred from Electronic Annotation
more info
 
located_in dendrite ISO
Inferred from Sequence Orthology
more info
 
located_in glutamatergic synapse IEA
Inferred from Electronic Annotation
more info
 
is_active_in glutamatergic synapse ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
located_in parallel fiber to Purkinje cell synapse IEA
Inferred from Electronic Annotation
more info
 
is_active_in parallel fiber to Purkinje cell synapse ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
 
is_active_in postsynapse ISO
Inferred from Sequence Orthology
more info
 
located_in postsynaptic density IEA
Inferred from Electronic Annotation
more info
 
is_active_in postsynaptic density ISO
Inferred from Sequence Orthology
more info
 
located_in postsynaptic density ISO
Inferred from Sequence Orthology
more info
 
located_in smooth endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 
is_active_in smooth endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
located_in smooth endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4
Names
PLC-beta-4
phosphoinositide phospholipase C
phosphoinositide phospholipase C-beta-4
NP_077329.2
XP_006235145.1
XP_006235147.1
XP_006235150.1
XP_006235156.1
XP_038960245.1
XP_038960247.1
XP_038960248.1
XP_038960249.1
XP_038960250.1
XP_038960251.1
XP_038960252.1
XP_038960253.1
XP_038960256.1
XP_063139199.1
XP_063139200.1
XP_063139201.1
XP_063139202.1
XP_063139203.1
XP_063139204.1
XP_063139205.1
XP_063139206.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001431415.1NP_001418344.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform a

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000003
    UniProtKB/TrEMBL
    A6HQJ1
  2. NM_001431416.1NP_001418345.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform b

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000003
    UniProtKB/TrEMBL
    D4A8C5
  3. NM_001431417.1NP_001418346.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform b

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000003
    UniProtKB/TrEMBL
    D4A8C5
  4. NM_001431418.1NP_001418347.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform b

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000003
    UniProtKB/TrEMBL
    D4A8C5
  5. NM_001431419.1NP_001418348.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform d

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000003
    UniProtKB/TrEMBL
    A6HQJ4
  6. NM_024353.3NP_077329.2  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform c

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000003
    UniProtKB/Swiss-Prot
    O88356, Q9QW07, Q9Z0G6
    UniProtKB/TrEMBL
    F1LNK2
    Conserved Domains (6) summary
    PTZ00121
    Location:8401171
    PTZ00121; MAEBL; Provisional
    cd00275
    Location:703819
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd08591
    Location:312669
    PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
    cd13361
    Location:17143
    PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
    cd16211
    Location:148300
    EFh_PI-PLCbeta4; EF-hand motif found in phosphoinositide phospholipase C beta 4 (PI-PLC-beta4)
    pfam06631
    Location:915956
    DUF1154; Protein of unknown function (DUF1154)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    143405721..143775129
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063283129.1XP_063139199.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X1

    UniProtKB/TrEMBL
    D4A8C5
  2. XM_063283132.1XP_063139202.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X1

    UniProtKB/TrEMBL
    D4A8C5
  3. XM_063283131.1XP_063139201.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X1

    UniProtKB/TrEMBL
    D4A8C5
  4. XM_006235085.5XP_006235147.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X1

    See identical proteins and their annotated locations for XP_006235147.1

    UniProtKB/TrEMBL
    A0A8I5Y961, D4A8C5
    Conserved Domains (6) summary
    PTZ00121
    Location:8591206
    PTZ00121; MAEBL; Provisional
    cd00275
    Location:714830
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd08591
    Location:312680
    PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
    cd13361
    Location:17143
    PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
    cd16211
    Location:148300
    EFh_PI-PLCbeta4; EF-hand motif found in phosphoinositide phospholipase C beta 4 (PI-PLC-beta4)
    pfam06631
    Location:926967
    DUF1154; Protein of unknown function (DUF1154)
  5. XM_039104325.2XP_038960253.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X1

    UniProtKB/TrEMBL
    A0A8I5Y961, D4A8C5
    Conserved Domains (6) summary
    PTZ00121
    Location:8591206
    PTZ00121; MAEBL; Provisional
    cd00275
    Location:714830
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd08591
    Location:312680
    PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
    cd13361
    Location:17143
    PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
    cd16211
    Location:148300
    EFh_PI-PLCbeta4; EF-hand motif found in phosphoinositide phospholipase C beta 4 (PI-PLC-beta4)
    pfam06631
    Location:926967
    DUF1154; Protein of unknown function (DUF1154)
  6. XM_063283134.1XP_063139204.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X2

    UniProtKB/TrEMBL
    A6HQJ1
    Related
    ENSRNOP00000087693.2, ENSRNOT00000097572.2
  7. XM_039104323.2XP_038960251.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X1

    UniProtKB/TrEMBL
    A0A8I5Y961, D4A8C5
    Conserved Domains (6) summary
    PTZ00121
    Location:8591206
    PTZ00121; MAEBL; Provisional
    cd00275
    Location:714830
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd08591
    Location:312680
    PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
    cd13361
    Location:17143
    PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
    cd16211
    Location:148300
    EFh_PI-PLCbeta4; EF-hand motif found in phosphoinositide phospholipase C beta 4 (PI-PLC-beta4)
    pfam06631
    Location:926967
    DUF1154; Protein of unknown function (DUF1154)
  8. XM_039104321.2XP_038960249.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X1

    Conserved Domains (6) summary
    PTZ00121
    Location:8591206
    PTZ00121; MAEBL; Provisional
    cd00275
    Location:714830
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd08591
    Location:312680
    PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
    cd13361
    Location:17143
    PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
    cd16211
    Location:148300
    EFh_PI-PLCbeta4; EF-hand motif found in phosphoinositide phospholipase C beta 4 (PI-PLC-beta4)
    pfam06631
    Location:926967
    DUF1154; Protein of unknown function (DUF1154)
  9. XM_039104317.2XP_038960245.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X1

    Conserved Domains (6) summary
    PTZ00121
    Location:8591206
    PTZ00121; MAEBL; Provisional
    cd00275
    Location:714830
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd08591
    Location:312680
    PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
    cd13361
    Location:17143
    PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
    cd16211
    Location:148300
    EFh_PI-PLCbeta4; EF-hand motif found in phosphoinositide phospholipase C beta 4 (PI-PLC-beta4)
    pfam06631
    Location:926967
    DUF1154; Protein of unknown function (DUF1154)
  10. XM_006235083.5XP_006235145.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X1

    Related
    ENSRNOP00000045972.3, ENSRNOT00000045393.6
    Conserved Domains (6) summary
    PTZ00121
    Location:8591206
    PTZ00121; MAEBL; Provisional
    cd00275
    Location:714830
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd08591
    Location:312680
    PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
    cd13361
    Location:17143
    PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
    cd16211
    Location:148300
    EFh_PI-PLCbeta4; EF-hand motif found in phosphoinositide phospholipase C beta 4 (PI-PLC-beta4)
    pfam06631
    Location:926967
    DUF1154; Protein of unknown function (DUF1154)
  11. XM_063283136.1XP_063139206.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X3

  12. XM_063283135.1XP_063139205.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X2

    Related
    ENSRNOP00000076875.2, ENSRNOT00000105709.2
  13. XM_006235094.5XP_006235156.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X4

    Related
    ENSRNOP00000048553.4, ENSRNOT00000042853.7
    Conserved Domains (7) summary
    cd00275
    Location:702818
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd08591
    Location:312668
    PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
    PLN02228
    Location:218807
    PLN02228; Phosphoinositide phospholipase C
    cd13361
    Location:17143
    PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
    pfam06631
    Location:914954
    DUF1154; Protein of unknown function (DUF1154)
    pfam09279
    Location:221312
    EF-hand_like; Phosphoinositide-specific phospholipase C, efhand-like
    pfam12474
    Location:10481160
    PKK; Polo kinase kinase
  14. XM_039104322.2XP_038960250.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X1

    UniProtKB/TrEMBL
    A0A8I5Y961, D4A8C5
    Conserved Domains (6) summary
    PTZ00121
    Location:8591206
    PTZ00121; MAEBL; Provisional
    cd00275
    Location:714830
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd08591
    Location:312680
    PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
    cd13361
    Location:17143
    PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
    cd16211
    Location:148300
    EFh_PI-PLCbeta4; EF-hand motif found in phosphoinositide phospholipase C beta 4 (PI-PLC-beta4)
    pfam06631
    Location:926967
    DUF1154; Protein of unknown function (DUF1154)
  15. XM_039104320.2XP_038960248.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X1

    UniProtKB/TrEMBL
    A0A8I5Y961, D4A8C5
    Conserved Domains (6) summary
    PTZ00121
    Location:8591206
    PTZ00121; MAEBL; Provisional
    cd00275
    Location:714830
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd08591
    Location:312680
    PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
    cd13361
    Location:17143
    PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
    cd16211
    Location:148300
    EFh_PI-PLCbeta4; EF-hand motif found in phosphoinositide phospholipase C beta 4 (PI-PLC-beta4)
    pfam06631
    Location:926967
    DUF1154; Protein of unknown function (DUF1154)
  16. XM_039104324.2XP_038960252.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X1

    UniProtKB/TrEMBL
    A0A8I5Y961, D4A8C5
    Conserved Domains (6) summary
    PTZ00121
    Location:8591206
    PTZ00121; MAEBL; Provisional
    cd00275
    Location:714830
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd08591
    Location:312680
    PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
    cd13361
    Location:17143
    PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
    cd16211
    Location:148300
    EFh_PI-PLCbeta4; EF-hand motif found in phosphoinositide phospholipase C beta 4 (PI-PLC-beta4)
    pfam06631
    Location:926967
    DUF1154; Protein of unknown function (DUF1154)
  17. XM_006235088.5XP_006235150.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X1

    See identical proteins and their annotated locations for XP_006235150.1

    UniProtKB/TrEMBL
    A0A8I5Y961, D4A8C5
    Conserved Domains (6) summary
    PTZ00121
    Location:8591206
    PTZ00121; MAEBL; Provisional
    cd00275
    Location:714830
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd08591
    Location:312680
    PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
    cd13361
    Location:17143
    PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
    cd16211
    Location:148300
    EFh_PI-PLCbeta4; EF-hand motif found in phosphoinositide phospholipase C beta 4 (PI-PLC-beta4)
    pfam06631
    Location:926967
    DUF1154; Protein of unknown function (DUF1154)
  18. XM_063283133.1XP_063139203.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X2

    UniProtKB/TrEMBL
    A6HQJ1
  19. XM_039104319.2XP_038960247.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X1

    UniProtKB/TrEMBL
    A0A8I5Y961, D4A8C5
    Conserved Domains (6) summary
    PTZ00121
    Location:8591206
    PTZ00121; MAEBL; Provisional
    cd00275
    Location:714830
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd08591
    Location:312680
    PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
    cd13361
    Location:17143
    PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
    cd16211
    Location:148300
    EFh_PI-PLCbeta4; EF-hand motif found in phosphoinositide phospholipase C beta 4 (PI-PLC-beta4)
    pfam06631
    Location:926967
    DUF1154; Protein of unknown function (DUF1154)
  20. XM_063283130.1XP_063139200.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X1

    UniProtKB/TrEMBL
    D4A8C5
  21. XM_039104328.2XP_038960256.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-4 isoform X5

    Conserved Domains (4) summary
    PTZ00121
    Location:591938
    PTZ00121; MAEBL; Provisional
    cd08591
    Location:44412
    PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
    PLN02228
    Location:16551
    PLN02228; Phosphoinositide phospholipase C
    pfam06631
    Location:658699
    DUF1154; Protein of unknown function (DUF1154)