U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

MCTS1_3 Malignant T-cell-amplified sequence 1 [ Schistosoma haematobium ]

Gene ID: 24598155, updated on 23-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
MCTS1_3
Gene description
Malignant T-cell-amplified sequence 1
Locus tag
MS3_00007467
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schistosoma haematobium (nat-host: Mesocricetus auratus)
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Platyhelminthes; Trematoda; Digenea; Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma
Old locus tag
MS3_0012808
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See MCTS1_3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Sequence:
Chromosome: 4; NC_067199.1 (14229905..14240302)

Chromosome 4 - NC_067199.1Genomic Context describing neighboring genes Neighboring gene Mitochondrial import inner membrane translocase subunit Tim17-A Neighboring gene Malignant T-cell-amplified sequence 1 Neighboring gene Dynactin subunit 2 Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_067199.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. High-quality Schistosoma haematobium genome achieved by single-molecule and long-range sequencing. Stroehlein AJ, et al. Gigascience, 2019 Sep 1. PMID 31494670, Free PMC Article
  2. Whole-genome sequence of Schistosoma haematobium. Young ND, et al. Nat Genet, 2012 Jan 15. PMID 22246508
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables xylosylprotein 4-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
Malignant T-cell-amplified sequence 1
XP_051066272.1
  • EggNog:ENOG410VBRK
    COG:J
    CAZy:GT7
    SECRETED:SignalP(1-19)

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_067199.1 Reference assembly

    Range
    14229905..14240302
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051215741.1 → XP_051066272.1  Malignant T-cell-amplified sequence 1 [Schistosoma haematobium]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A922LGE8
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases