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RPUSD4_1 Mitochondrial RNA pseudouridine synthase rpusd4 [ Schistosoma haematobium ]

Gene ID: 24595042, updated on 23-Nov-2023

Summary

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Gene symbol
RPUSD4_1
Gene description
Mitochondrial RNA pseudouridine synthase rpusd4
Locus tag
MS3_00007108
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schistosoma haematobium (nat-host: Mesocricetus auratus)
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Platyhelminthes; Trematoda; Digenea; Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma
Old locus tag
MS3_0019887
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Genomic context

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See RPUSD4_1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
11
Sequence:
Chromosome: 2; NC_067197.1 (46019653..46048816, complement)

Chromosome 2 - NC_067197.1Genomic Context describing neighboring genes Neighboring gene PHD finger protein 12 Neighboring gene hypothetical protein Neighboring gene Ribosomal protein S6 kinase beta-2 Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067197.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. High-quality Schistosoma haematobium genome achieved by single-molecule and long-range sequencing. Stroehlein AJ, et al. Gigascience, 2019 Sep 1. PMID 31494670, Free PMC Article
  2. Whole-genome sequence of Schistosoma haematobium. Young ND, et al. Nat Genet, 2012 Jan 15. PMID 22246508

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pseudouridine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cobalamin metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Mitochondrial RNA pseudouridine synthase rpusd4
XP_051068576.1
  • EggNog:ENOG410V9QW
    COG:A
    SECRETED:SignalP(1-28)
XP_051068577.1
  • EggNog:ENOG410V9QW
    COG:A

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_067197.1 Reference assembly

    Range
    46019653..46048816 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051215362.1 → XP_051068576.1  Mitochondrial RNA pseudouridine synthase rpusd4 [Schistosoma haematobium]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A922ISU3

  2. XM_051215363.1 → XP_051068577.1  Mitochondrial RNA pseudouridine synthase rpusd4, variant 2 [Schistosoma haematobium]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A922ISZ6
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases