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Dcaf12l1 DDB1 and CUL4 associated factor 12-like 1 [ Mus musculus (house mouse) ]

Gene ID: 245404, updated on 6-Oct-2024

Summary

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Official Symbol
Dcaf12l1provided by MGI
Official Full Name
DDB1 and CUL4 associated factor 12-like 1provided by MGI
Primary source
MGI:MGI:2444462
See related
Ensembl:ENSMUSG00000045284 AllianceGenome:MGI:2444462
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Wdr40b; Decaf12l1; 9330180J20; A230038L21Rik
Summary
Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Is expressed in follicle cell of primordial follicle and ovary. Orthologous to human DCAF12L1 (DDB1 and CUL4 associated factor 12 like 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in frontal lobe adult (RPKM 6.9), cortex adult (RPKM 6.6) and 20 other tissues See more
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Genomic context

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See Dcaf12l1 in Genome Data Viewer
Location:
X A4; X 24.0 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (43875444..43879074, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (44786567..44790197, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_47080 Neighboring gene inosine triphosphatase (nucleoside triphosphate pyrophosphatase) pseudogene 3 Neighboring gene crumbs homolog 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_47081 Neighboring gene STARR-seq mESC enhancer starr_47082 Neighboring gene SEC13 homolog pseudogene Neighboring gene proline rich 32

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. DDB1- and CUL4-associated factor 12-like protein 1 (Dcaf12l1) is not essential for male fertility in mice. Houston BJ, et al. Dev Biol, 2022 Oct. PMID 35850260
  2. Ectopic expression of DNA methyltransferases DNMT3A2 and DNMT3L leads to aberrant hypermethylation and postnatal lethality in mice. Sasaki K, et al. Mol Reprod Dev, 2019 Jun. PMID 30834655, Free PMC Article
  3. Elf5 counteracts precocious trophoblast differentiation by maintaining Sox2 and 3 and inhibiting Hand1 expression. Pearton DJ, et al. Dev Biol, 2014 Aug 15. PMID 24859262
  4. Genomewide discovery and classification of candidate ovarian fertility genes in the mouse. Gallardo TD, et al. Genetics, 2007 Sep. PMID 17660561, Free PMC Article
  5. Placental PPARγ regulates spatiotemporally diverse genes and a unique metabolic network. Shalom-Barak T, et al. Dev Biol, 2012 Dec 1. PMID 22967998, Free PMC Article

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. DDB1- and CUL4-associated factor 12-like protein 1 (Dcaf12l1) is not essential for male fertility in mice.
    Title: DDB1- and CUL4-associated factor 12-like protein 1 (Dcaf12l1) is not essential for male fertility in mice.
  2. Transcripts highly enriched in ovary; gene identified as candidate female fertility factor.
    Title: Genomewide discovery and classification of candidate ovarian fertility genes in the mouse.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
part_of Cul4-RING E3 ubiquitin ligase complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
DDB1- and CUL4-associated factor 12-like protein 1
Names
WD repeat domain 40B
WD repeat-containing protein 40B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001190718.1 → NP_001177647.1  DDB1- and CUL4-associated factor 12-like protein 1

    See identical proteins and their annotated locations for NP_001177647.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (B) differs in the 3' UTR compared to variant A. Both variants A and B encode the same protein.
    Source sequence(s)
    AK038557, AK047360, AL670238, BB337276
    Consensus CDS
    CCDS30101.1
    UniProtKB/Swiss-Prot
    Q6NV47, Q8C8E2, Q8CA30, Q8CAL3, Q8CBW4, Q8CBX8
    Related
    ENSMUSP00000110708.2, ENSMUST00000115056.2
    Conserved Domains (2) summary
    COG2319
    Location:190 → 428
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:138 → 180
    7WD40; WD40 repeat [structural motif]

  2. NM_178739.6 → NP_848854.3  DDB1- and CUL4-associated factor 12-like protein 1

    See identical proteins and their annotated locations for NP_848854.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (A) represents the longer transcript. Both variants A and B encode the same protein.
    Source sequence(s)
    AK034472, AK038557, AL670238, BB337276
    Consensus CDS
    CCDS30101.1
    UniProtKB/Swiss-Prot
    Q6NV47, Q8C8E2, Q8CA30, Q8CAL3, Q8CBW4, Q8CBX8
    Related
    ENSMUSP00000062991.3, ENSMUST00000060481.9
    Conserved Domains (2) summary
    COG2319
    Location:190 → 428
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:138 → 180
    7WD40; WD40 repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    43875444..43879074 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8CBW4.1 GenPept UniProtKB/Swiss-Prot:Q8CBW4

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
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