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4933405O20Rik RIKEN cDNA 4933405O20 gene [ Mus musculus (house mouse) ]

Gene ID: 243996, updated on 2-Nov-2024

Summary

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Official Symbol
4933405O20Rikprovided by MGI
Official Full Name
RIKEN cDNA 4933405O20 geneprovided by MGI
Primary source
MGI:MGI:2142174
See related
Ensembl:ENSMUSG00000084234 AllianceGenome:MGI:2142174
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to enable magnesium ion binding activity. Predicted to be involved in isocitrate metabolic process and tricarboxylic acid cycle. Located in mitochondrion. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human all
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Genomic context

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See 4933405O20Rik in Genome Data Viewer
Location:
7 B4; 7 32.53 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (50248938..50250276)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (50599190..50600528)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_18918 Neighboring gene STARR-seq mESC enhancer starr_18919 Neighboring gene solute carrier family 6 (neurotransmitter transporter, glycine), member 5 Neighboring gene NEL-like 1 Neighboring gene STARR-seq mESC enhancer starr_18921 Neighboring gene STARR-seq mESC enhancer starr_18922 Neighboring gene NEL-like 1, opposite strand Neighboring gene predicted gene, 21032 Neighboring gene retinoblastoma binding protein 6 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A mitochondrial protein compendium elucidates complex I disease biology. Pagliarini DJ, et al. Cell, 2008 Jul 11. PMID 18614015, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables magnesium ion binding ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in isocitrate metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in tricarboxylic acid cycle IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion HDA PubMed 
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
probable isocitrate dehydrogenase [NAD] gamma 2, mitochondrial
Names
NAD(+)-specific ICDH subunit gamma 2
isocitric dehydrogenase subunit gamma 2
NP_766489.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_172901.2 → NP_766489.1  probable isocitrate dehydrogenase [NAD] gamma 2, mitochondrial

    See identical proteins and their annotated locations for NP_766489.1

    Status: PROVISIONAL

    Source sequence(s)
    AK077105
    Consensus CDS
    CCDS71974.1
    UniProtKB/Swiss-Prot
    Q8BPC6
    Related
    ENSMUSP00000138215.2, ENSMUST00000119710.3
    Conserved Domains (1) summary
    cl00445
    Location:49 → 380
    Iso_dh; Isocitrate/isopropylmalate dehydrogenase

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    50248938..50250276
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8BPC6.1 GenPept UniProtKB/Swiss-Prot:Q8BPC6

Gene LinkOut

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