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Garin5b golgi associated RAB2 interactor family member 5B [ Mus musculus (house mouse) ]

Gene ID: 243822, updated on 14-Nov-2024

Summary

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Official Symbol
Garin5bprovided by MGI
Official Full Name
golgi associated RAB2 interactor family member 5Bprovided by MGI
Primary source
MGI:MGI:3045311
See related
Ensembl:ENSMUSG00000092518 AllianceGenome:MGI:3045311
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Fam71e2; 4930401F20Rik
Summary
Orthologous to human GARIN5B (golgi associated RAB2 interactor family member 5B). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward testis adult (RPKM 148.2) See more
Orthologs
human all
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Genomic context

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See Garin5b in Genome Data Viewer
Location:
7 A1; 7 2.75 cM
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (4756225..4774362, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (4753226..4771363, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E127 Neighboring gene lysine methyltransferase 5C Neighboring gene STARR-seq mESC enhancer starr_17937 Neighboring gene cytochrome c oxidase subunit 6B2 Neighboring gene interleukin 11 Neighboring gene transmembrane protein 190 Neighboring gene transmembrane protein 238

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Golgi associated RAB2 interactor protein family contributes to murine male fertility to various extents by assuring correct morphogenesis of sperm heads. Wang H, et al. PLoS Genet, 2024 Jun. PMID 38935810, Free PMC Article
  2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
acts_upstream_of_or_within cell morphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within single fertilization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within vacuole organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in sperm head IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
Golgi-associated RAB2 interactor protein 5B
Names
family with sequence similarity 71, member E2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_172895.3 → NP_766483.3  Golgi-associated RAB2 interactor protein 5B

    Status: PROVISIONAL

    Source sequence(s)
    AC161197, AC162034
    Consensus CDS
    CCDS57474.1
    UniProtKB/TrEMBL
    L7N480
    Related
    ENSMUSP00000133885.3, ENSMUST00000174409.2
    Conserved Domains (1) summary
    pfam12480
    Location:102 → 172
    DUF3699; Protein of unknown function (DUF3699)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    4756225..4774362 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017322231.2 → XP_017177720.1  Golgi-associated RAB2 interactor protein 5B isoform X2

    Conserved Domains (1) summary
    pfam12480
    Location:102 → 172
    DUF3699; Protein of unknown function (DUF3699)

  2. XM_017322230.2 → XP_017177719.1  Golgi-associated RAB2 interactor protein 5B isoform X1

    Conserved Domains (1) summary
    pfam12480
    Location:102 → 172
    DUF3699; Protein of unknown function (DUF3699)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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