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SCAB_RS41470 alpha-L-rhamnosidase [ Streptomyces scabiei 87.22 ]

Gene ID: 24311810, updated on 15-Apr-2023

Summary

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Gene symbol
SCAB_RS41470
Gene description
alpha-L-rhamnosidase
Locus tag
SCAB_RS41470
Gene type
protein coding
Organism
Streptomyces scabiei 87.22 (strain: 87.22)
Lineage
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces
Old locus tag
SCAB_86701
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Genomic context

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Sequence:
NC_013929.1 (9687060..9690197)

NC_013929.1Genomic Context describing neighboring genes Neighboring gene sugar ABC transporter permease Neighboring gene carbohydrate ABC transporter permease Neighboring gene extracellular solute-binding protein Neighboring gene alpha-L-rhamnosidase Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013929.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Streptomyces scabies 87-22 contains a coronafacic acid-like biosynthetic cluster that contributes to plant-microbe interactions. Bignell DR, et al. Mol Plant Microbe Interact, 2010 Feb. PMID 20064060

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
alpha-L-rhamnosidase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013929.1 Reference assembly

    Range
    9687060..9690197
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_013006049.1 alpha-L-rhamnosidase [Streptomyces scabiei]

    See identical proteins and their annotated locations for WP_013006049.1

    UniProtKB/TrEMBL
    C9Z390
    Conserved Domains (4) summary
    pfam05592
    Location:487 → 599
    Bac_rhamnosid; Bacterial alpha-L-rhamnosidase concanavalin-like domain
    pfam08531
    Location:193 → 479
    Bac_rhamnosid_N; Alpha-L-rhamnosidase N-terminal domain
    pfam17390
    Location:959 → 1037
    Bac_rhamnosid_C; Bacterial alpha-L-rhamnosidase C-terminal domain
    cl29051
    Location:605 → 957
    Bac_rhamnosid6H; Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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