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SCAB_RS09250 rhamnogalacturonan lyase B N-terminal domain-containing protein [ Streptomyces scabiei 87.22 ]

Gene ID: 24311389, updated on 15-Apr-2023

Summary

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Gene symbol
SCAB_RS09250
Gene description
rhamnogalacturonan lyase B N-terminal domain-containing protein
Locus tag
SCAB_RS09250
Gene type
protein coding
Organism
Streptomyces scabiei 87.22 (strain: 87.22)
Lineage
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces
Old locus tag
SCAB_19551
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Genomic context

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Sequence:
NC_013929.1 (2213263..2214957)

NC_013929.1Genomic Context describing neighboring genes Neighboring gene DUF2264 domain-containing protein Neighboring gene rhamnogalacturonan acetylesterase Neighboring gene RICIN domain-containing protein Neighboring gene glycoside hydrolase family 43 protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013929.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Rhamnogalacturonan lyase reveals a unique three-domain modular structure for polysaccharide lyase family 4. McDonough MA, et al. FEBS Lett, 2004 May 7. PMID 15135077
  2. Structural and biochemical studies elucidate the mechanism of rhamnogalacturonan lyase from Aspergillus aculeatus. Jensen MH, et al. J Mol Biol, 2010 Nov 19. PMID 20851126
  3. Streptomyces scabies 87-22 contains a coronafacic acid-like biosynthetic cluster that contributes to plant-microbe interactions. Bignell DR, et al. Mol Plant Microbe Interact, 2010 Feb. PMID 20064060

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
rhamnogalacturonan lyase B N-terminal domain-containing protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013929.1 Reference assembly

    Range
    2213263..2214957
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_012999800.1 MULTISPECIES: rhamnogalacturonan lyase B N-terminal domain-containing protein [Streptomyces]

    See identical proteins and their annotated locations for WP_012999800.1

    UniProtKB/TrEMBL
    C9YT62
    Conserved Domains (3) summary
    cd10316
    Location:300 → 379
    RGL4_M; Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase
    cd10317
    Location:394 → 562
    RGL4_C; C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase
    pfam09284
    Location:45 → 294
    RhgB_N; Rhamnogalacturonan lyase B, N-terminal
Nucleotide Protein
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