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SCAB_RS41400 alpha-L-rhamnosidase [ Streptomyces scabiei 87.22 ]

Gene ID: 24308026, updated on 15-Apr-2023

Summary

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Gene symbol
SCAB_RS41400
Gene description
alpha-L-rhamnosidase
Locus tag
SCAB_RS41400
Gene type
protein coding
Organism
Streptomyces scabiei 87.22 (strain: 87.22)
Lineage
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces
Old locus tag
SCAB_86561
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Genomic context

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Sequence:
NC_013929.1 (9670782..9673424, complement)

NC_013929.1Genomic Context describing neighboring genes Neighboring gene ABC transporter substrate-binding protein Neighboring gene LacI family DNA-binding transcriptional regulator Neighboring gene alpha/beta hydrolase Neighboring gene alpha/beta fold hydrolase Neighboring gene MFS transporter Neighboring gene LacI family DNA-binding transcriptional regulator

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_013929.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Streptomyces scabies 87-22 contains a coronafacic acid-like biosynthetic cluster that contributes to plant-microbe interactions. Bignell DR, et al. Mol Plant Microbe Interact, 2010 Feb. PMID 20064060

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
alpha-L-rhamnosidase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_013929.1 Reference assembly

    Range
    9670782..9673424 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_013006035.1 MULTISPECIES: alpha-L-rhamnosidase [Streptomyces]

    See identical proteins and their annotated locations for WP_013006035.1

    UniProtKB/TrEMBL
    C9Z376
    Conserved Domains (4) summary
    pfam05592
    Location:332 → 419
    Bac_rhamnosid; Bacterial alpha-L-rhamnosidase concanavalin-like domain
    pfam17390
    Location:790 → 855
    Bac_rhamnosid_C; Bacterial alpha-L-rhamnosidase C-terminal domain
    pfam08531
    Location:156 → 312
    Bac_rhamnosid_N; Alpha-L-rhamnosidase N-terminal domain
    pfam17389
    Location:435 → 788
    Bac_rhamnosid6H; Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain
Nucleotide Protein
Heading Accession and Version

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