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Spdye4c speedy/RINGO cell cycle regulator family, member E4C [ Mus musculus (house mouse) ]

Gene ID: 241634, updated on 2-Nov-2024

Summary

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Official Symbol
Spdye4cprovided by MGI
Official Full Name
speedy/RINGO cell cycle regulator family, member E4Cprovided by MGI
Primary source
MGI:MGI:2685201
See related
Ensembl:ENSMUSG00000074812 AllianceGenome:MGI:2685201
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm355; SpyB3; SpeedyB3
Summary
Predicted to enable protein kinase binding activity. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward testis adult (RPKM 5.1) See more
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Genomic context

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See Spdye4c in Genome Data Viewer
Location:
2 F1; 2 62.63 cM
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (128433121..128443483)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (128591201..128601662)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene predicted gene, 36203 Neighboring gene STARR-seq mESC enhancer starr_05648 Neighboring gene non-histone chromosomal protein HMG-17 pseudogene Neighboring gene predicted gene, 39929 Neighboring gene protein transport protein Sec61 subunit gamma pseudogene Neighboring gene anaphase promoting complex subunit 1 Neighboring gene STARR-positive B cell enhancer ABC_E4498

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Evolution of the Cdk-activator Speedy/RINGO in vertebrates. Chauhan S, et al. Cell Mol Life Sci, 2012 Nov. PMID 22763696, Free PMC Article
  2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein kinase binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
speedy/RINGO cell cycle regulator family, member E4C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001310641.1 → NP_001297570.1  speedy/RINGO cell cycle regulator family, member E4C

    See identical proteins and their annotated locations for NP_001297570.1

    Status: VALIDATED

    Source sequence(s)
    JQ023159
    Consensus CDS
    CCDS79844.1
    UniProtKB/TrEMBL
    A2AQG6, I6XKQ3, J3KMS1
    Related
    ENSMUSP00000117916.3, ENSMUST00000155430.9
    Conserved Domains (1) summary
    pfam11357
    Location:207 → 335
    Spy1; Cell cycle regulatory protein

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    128433121..128443483
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017318199.3 → XP_017173688.1  speedy/RINGO cell cycle regulator family, member E4C isoform X1

    UniProtKB/TrEMBL
    A2AQG6, I6XKQ3, J3KMS1
    Conserved Domains (1) summary
    pfam11357
    Location:207 → 335
    Spy1; Cell cycle regulatory protein

  2. XM_017318198.2 → XP_017173687.1  speedy/RINGO cell cycle regulator family, member E4C isoform X1

    UniProtKB/TrEMBL
    A2AQG6, I6XKQ3, J3KMS1
    Conserved Domains (1) summary
    pfam11357
    Location:207 → 335
    Spy1; Cell cycle regulatory protein
Nucleotide Protein Strain
Heading Accession and Version

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