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Gm4952 predicted gene 4952 [ Mus musculus (house mouse) ]

Gene ID: 240549, updated on 2-Nov-2024

Summary

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Official Symbol
Gm4952provided by MGI
Official Full Name
predicted gene 4952provided by MGI
Primary source
MGI:MGI:3643569
See related
Ensembl:ENSMUSG00000071633 AllianceGenome:MGI:3643569
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG240549
Summary
Predicted to enable N-acyltransferase activity. Located in mitochondrion. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in liver E18 (RPKM 53.9) and liver adult (RPKM 22.6) See more
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Genomic context

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See Gm4952 in Genome Data Viewer
Location:
19 A; 19 8.73 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (12577348..12604980)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (12599984..12627616)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E3245 Neighboring gene STARR-positive B cell enhancer ABC_E8930 Neighboring gene family with sequence similarity 111, member A Neighboring gene RIKEN cDNA A330040F15 gene Neighboring gene RIKEN cDNA 4122401K19 gene Neighboring gene glycine-N-acyltransferase Neighboring gene STARR-seq mESC enhancer starr_45596 Neighboring gene predicted gene, 24521

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Substrate and functional diversity of lysine acetylation revealed by a proteomics survey. Kim SC, et al. Mol Cell, 2006 Aug. PMID 16916647
  2. A mitochondrial protein compendium elucidates complex I disease biology. Pagliarini DJ, et al. Cell, 2008 Jul 11. PMID 18614015, Free PMC Article
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

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Homology

Clone Names

  • MGC107682

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables N-acyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables glycine N-acyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion HDA PubMed 
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
glycine N-acyltransferase-like protein
NP_001013784.2
NP_001161379.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013762.2 → NP_001013784.2  glycine N-acyltransferase-like protein

    See identical proteins and their annotated locations for NP_001013784.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 both encode the same protein.
    Source sequence(s)
    AC129014
    Consensus CDS
    CCDS50398.1
    UniProtKB/Swiss-Prot
    E9QNP7, Q5FW57
    Related
    ENSMUSP00000090607.6, ENSMUST00000092931.7
    Conserved Domains (2) summary
    pfam06021
    Location:10 → 206
    Gly_acyl_tr_N; Aralkyl acyl-CoA:amino acid N-acyltransferase
    cl17182
    Location:207 → 295
    NAT_SF; N-Acyltransferase superfamily: Various enyzmes that characteristicly catalyze the transfer of an acyl group to a substrate

  2. NM_001167907.1 → NP_001161379.1  glycine N-acyltransferase-like protein

    See identical proteins and their annotated locations for NP_001161379.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 both encode the same protein.
    Source sequence(s)
    AC129014
    Consensus CDS
    CCDS50398.1
    UniProtKB/Swiss-Prot
    E9QNP7, Q5FW57
    Conserved Domains (2) summary
    pfam06021
    Location:10 → 206
    Gly_acyl_tr_N; Aralkyl acyl-CoA:amino acid N-acyltransferase
    cl17182
    Location:207 → 295
    NAT_SF; N-Acyltransferase superfamily: Various enyzmes that characteristicly catalyze the transfer of an acyl group to a substrate

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    12577348..12604980
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5FW57.3 GenPept UniProtKB/Swiss-Prot:Q5FW57

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