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CNAG_03575 alpha-L-rhamnosidase [ Cryptococcus neoformans var. grubii H99 ]

Gene ID: 23887061, updated on 17-May-2024

Summary

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Gene symbol
CNAG_03575
Gene description
alpha-L-rhamnosidase
Locus tag
CNAG_03575
See related
FungiDB:CNAG_03575; VEuPathDB:CNAG_03575
Gene type
protein coding
RNA name
alpha-L-rhamnosidase
RefSeq status
PROVISIONAL
Organism
Cryptococcus neoformans var. grubii H99 (strain: H99)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex
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Genomic context

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See CNAG_03575 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
6
Sequence:
Chromosome: 8; NC_026752.1 (1313266..1316793)

Chromosome 8 - NC_026752.1Genomic Context describing neighboring genes Neighboring gene kynurenine 3-monooxygenase Neighboring gene acyl-CoA oxidase Neighboring gene ncRNA Neighboring gene large subunit ribosomal protein LP0 Neighboring gene cytochrome C assembly protein Neighboring gene hypothetical protein Neighboring gene tRNA (uracil-5-)-methyltransferase TRM9

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_026752.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of the genome and transcriptome of Cryptococcus neoformans var. grubii reveals complex RNA expression and microevolution leading to virulence attenuation. Janbon G, et al. PLoS Genet, 2014 Apr. PMID 24743168, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

polyA_site

  • Loc: 1316575-1316575

General protein information

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Preferred Names
alpha-L-rhamnosidase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_026752.1 Reference assembly

    Range
    1313266..1316793
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012195619.1 → XP_012051009.1  alpha-L-rhamnosidase [Cryptococcus neoformans var. grubii H99]

    See identical proteins and their annotated locations for XP_012051009.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A854Q719, J9VQP4
    Conserved Domains (2) summary
    pfam05592
    Location:306 → 824
    Bac_rhamnosid; Bacterial alpha-L-rhamnosidase
    pfam08531
    Location:142 → 299
    Bac_rhamnosid_N; Alpha-L-rhamnosidase N-terminal domain
Nucleotide Protein
Heading Accession and Version

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