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HTIA_RS04605 alpha-amylase family glycosyl hydrolase [ Halorhabdus tiamatea SARL4B ]

Gene ID: 23797741, updated on 22-Oct-2024

Summary

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Gene symbol
HTIA_RS04605
Gene description
alpha-amylase family glycosyl hydrolase
Locus tag
HTIA_RS04605
Gene type
protein coding
Organism
Halorhabdus tiamatea SARL4B (strain: type strain: SARL4B, type-material: type strain of Halorhabdus tiamatea)
Lineage
Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group; Halobacteria; Halobacteriales; Haloarculaceae; Halorhabdus
Old locus tag
HTIA_0926
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Genomic context

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Location:
chromosome: I
Sequence:
Chromosome: I; NC_021921.1 (899454..901058, complement)

Chromosome I - NC_021921.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene VWA domain-containing protein Neighboring gene alpha-amylase family glycosyl hydrolase Neighboring gene alpha-glucosidase Neighboring gene alpha-glucosidase Neighboring gene TrmB family transcriptional regulator

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_021921.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Crystal structure of yellow meal worm alpha-amylase at 1.64 A resolution. Strobl S, et al. J Mol Biol, 1998 May 8. PMID 9600843
  2. Refined molecular structure of pig pancreatic alpha-amylase at 2.1 A resolution. Larson SB, et al. J Mol Biol, 1994 Feb 4. PMID 8107092
  3. Halorhabdus tiamatea: proteogenomics and glycosidase activity measurements identify the first cultivated euryarchaeon from a deep-sea anoxic brine lake as potential polysaccharide degrader. Werner J, et al. Environ Microbiol, 2014 Aug. PMID 24428220, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
alpha-amylase family glycosyl hydrolase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_021921.1 Reference assembly

    Range
    899454..901058 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_008526808.1 alpha-amylase family glycosyl hydrolase [Halorhabdus tiamatea]

    See identical proteins and their annotated locations for WP_008526808.1

    UniProtKB/TrEMBL
    F7PLF3
    Conserved Domains (2) summary
    COG0366
    Location:52 → 516
    AmyA; Glycosidase [Carbohydrate transport and metabolism]
    cl07893
    Location:48 → 418
    AmyAc_family; Alpha amylase catalytic domain family
Nucleotide Protein
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