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Agr2 anterior gradient 2 [ Mus musculus (house mouse) ]

Gene ID: 23795, updated on 28-Oct-2024

Summary

Official Symbol
Agr2provided by MGI
Official Full Name
anterior gradient 2provided by MGI
Primary source
MGI:MGI:1344405
See related
Ensembl:ENSMUSG00000020581 AllianceGenome:MGI:1344405
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Agr2h; Gob-4; HAG-2; XAG-2; mAG-2
Summary
Predicted to enable dystroglycan binding activity; epidermal growth factor receptor binding activity; and protein homodimerization activity. Involved in digestive tract morphogenesis; mucus secretion; and positive regulation of developmental growth. Acts upstream of or within inflammatory response and lung goblet cell differentiation. Located in endoplasmic reticulum. Is expressed in several structures, including eye; genitourinary system; gut; liver; and lung. Orthologous to human AGR2 (anterior gradient 2, protein disulphide isomerase family member). [provided by Alliance of Genome Resources, Oct 2024]
Expression
Biased expression in large intestine adult (RPKM 438.3), colon adult (RPKM 350.8) and 4 other tissues See more
Orthologs
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Genomic context

See Agr2 in Genome Data Viewer
Location:
12 A3; 12 16.18 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (36042924..36054080)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (35992925..36004081)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene predicted gene 9472 Neighboring gene STARR-seq mESC enhancer starr_31911 Neighboring gene anterior gradient 3 Neighboring gene STARR-seq mESC enhancer starr_31913 Neighboring gene tetraspanin 13 Neighboring gene STARR-positive B cell enhancer ABC_E10744 Neighboring gene STARR-positive B cell enhancer ABC_E2382 Neighboring gene STARR-seq mESC enhancer starr_31914 Neighboring gene ubiquitin-conjugating enzyme E2F (putative), retrotransposed

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (7) 
  • Targeted (9)  1 citation

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables dystroglycan binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables dystroglycan binding IEA
Inferred from Electronic Annotation
more info
 
enables dystroglycan binding ISO
Inferred from Sequence Orthology
more info
 
enables epidermal growth factor receptor binding IEA
Inferred from Electronic Annotation
more info
 
enables epidermal growth factor receptor binding ISO
Inferred from Sequence Orthology
more info
 
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
 
enables identical protein binding ISS
Inferred from Sequence or Structural Similarity
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein homodimerization activity ISO
Inferred from Sequence Orthology
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cell chemotaxis ISO
Inferred from Sequence Orthology
more info
PubMed 
involved_in digestive tract morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within endoplasmic reticulum unfolded protein response ISO
Inferred from Sequence Orthology
more info
PubMed 
acts_upstream_of_or_within inflammatory response IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within lung goblet cell differentiation IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within mucus secretion IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in mucus secretion IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of IRE1-mediated unfolded protein response IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of IRE1-mediated unfolded protein response ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of PERK-mediated unfolded protein response IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of PERK-mediated unfolded protein response ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of cell-substrate adhesion ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of cell-substrate adhesion ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in positive regulation of developmental growth IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of epidermal growth factor receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of epidermal growth factor receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of gene expression ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of protein localization to plasma membrane IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of protein localization to plasma membrane ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within protein folding in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
PubMed 
Component Evidence Code Pubs
is_active_in endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
PubMed 
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
located_in extracellular region ISO
Inferred from Sequence Orthology
more info
 
located_in extracellular region ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 
located_in extracellular space ISO
Inferred from Sequence Orthology
more info
 
located_in mitochondrion HDA PubMed 

General protein information

Preferred Names
anterior gradient protein 2 homolog
Names
AG-2
anterior gradient 2 homolog
protein Gob-4
secreted cement gland protein XAG-2 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_011783.2NP_035913.1  anterior gradient protein 2 homolog precursor

    See identical proteins and their annotated locations for NP_035913.1

    Status: PROVISIONAL

    Source sequence(s)
    CT030196
    Consensus CDS
    CCDS25881.1
    UniProtKB/Swiss-Prot
    A2CGA2, O88312
    Related
    ENSMUSP00000020898.6, ENSMUST00000020898.12
    Conserved Domains (1) summary
    cd02960
    Location:47175
    AGR; Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of ...

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    36042924..36054080
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)