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Rassf9 Ras association (RalGDS/AF-6) domain family (N-terminal) member 9 [ Mus musculus (house mouse) ]

Gene ID: 237504, updated on 28-Oct-2024

Summary

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Official Symbol
Rassf9provided by MGI
Official Full Name
Ras association (RalGDS/AF-6) domain family (N-terminal) member 9provided by MGI
Primary source
MGI:MGI:2384307
See related
Ensembl:ENSMUSG00000044921 AllianceGenome:MGI:2384307
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Pamci
Summary
Predicted to enable enzyme binding activity and protein domain specific binding activity. Predicted to be involved in intracellular transport. Predicted to be located in endosome. Predicted to be active in cytosol; recycling endosome; and trans-Golgi network transport vesicle membrane. Is expressed in several structures, including metanephros; renal large blood vessel; respiratory system; sensory organ; and tooth. Orthologous to human RASSF9 (Ras association domain family member 9). [provided by Alliance of Genome Resources, Oct 2024]
Expression
Broad expression in lung adult (RPKM 1.5), heart adult (RPKM 1.1) and 19 other tissues See more
Orthologs
human all
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Genomic context

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See Rassf9 in Genome Data Viewer
Location:
10 D1; 10 53.56 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (102348083..102385598)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (102512222..102549737)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene MGAT4 family, member C Neighboring gene microRNA 3059 Neighboring gene STARR-seq mESC enhancer starr_27742 Neighboring gene STARR-seq mESC enhancer starr_27743 Neighboring gene STARR-seq mESC enhancer starr_27744 Neighboring gene STARR-seq mESC enhancer starr_27745 Neighboring gene neurotensin Neighboring gene predicted gene 5175 Neighboring gene predicted gene, 34298 Neighboring gene ALX homeobox 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A novel role of RASSF9 in maintaining epidermal homeostasis. Lee CM, et al. PLoS One, 2011 Mar 21. PMID 21445300, Free PMC Article
  2. Integrated microarray and ChIP analysis identifies multiple Foxa2 dependent target genes in the notochord. Tamplin OJ, et al. Dev Biol, 2011 Dec 15. PMID 22008794
  3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Markers

Homology

Clone Names

  • MGC41694

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables enzyme binding ISO
Inferred from Sequence Orthology
more info
  
enables protein domain specific binding ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in intracellular transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in intracellular transport ISO
Inferred from Sequence Orthology
more info
  
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytosol ISO
Inferred from Sequence Orthology
more info
  
located_in cytosol ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in endosome ISO
Inferred from Sequence Orthology
more info
  
located_in endosome ISS
Inferred from Sequence or Structural Similarity
more info
  
is_active_in recycling endosome IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in recycling endosome ISO
Inferred from Sequence Orthology
more info
  
is_active_in trans-Golgi network transport vesicle membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in trans-Golgi network transport vesicle membrane ISO
Inferred from Sequence Orthology
more info
  
located_in trans-Golgi network transport vesicle membrane ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
ras association domain-containing protein 9
Names
P-CIP1
PAM COOH-terminal interactor protein 1
peptidylglycine alpha-amidating monooxygenase COOH-terminal interactor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_146240.4 → NP_666352.1  ras association domain-containing protein 9

    See identical proteins and their annotated locations for NP_666352.1

    Status: PROVISIONAL

    Source sequence(s)
    AC131720, AC148992
    Consensus CDS
    CCDS36048.1
    UniProtKB/Swiss-Prot
    Q8BZV4, Q8K342
    Related
    ENSMUSP00000151843.2, ENSMUST00000219445.2
    Conserved Domains (1) summary
    smart00314
    Location:23 → 118
    RA; Ras association (RalGDS/AF-6) domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    102348083..102385598
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036155781.1 → XP_036011674.1  ras association domain-containing protein 9 isoform X2

  2. XM_006513632.5 → XP_006513695.1  ras association domain-containing protein 9 isoform X1

    UniProtKB/TrEMBL
    A0A1X7SB70
    Related
    ENSMUSP00000054767.6, ENSMUST00000055355.6
    Conserved Domains (1) summary
    cd16133
    Location:26 → 118
    RA_RASSF9; Ras-associating (RA) domain of N-terminal Ras-association domain family 9 (RASSF9)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8K342.1 GenPept UniProtKB/Swiss-Prot:Q8K342

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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Chemical Information
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