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FGSG_11304 endo-1,4-beta-xylanase [ Fusarium graminearum PH-1 ]

Gene ID: 23558155, updated on 2-Jan-2024

Summary

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Gene symbol
FGSG_11304
Gene description
endo-1,4-beta-xylanase
Locus tag
FGSG_11304
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Fusarium graminearum PH-1 (strain: PH-1; NRRL 31084)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Hypocreales; Nectriaceae; Fusarium
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Genomic context

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See FGSG_11304 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_026476.1 (7516714..7517963, complement)

Chromosome 3 - NC_026476.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_026476.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization. Cuomo CA, et al. Science, 2007 Sep 7. PMID 17823352
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
endo-1,4-beta-xylanase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_026476.1 Reference assembly

    Range
    7516714..7517963 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011327638.1 → XP_011325940.1  endo-1,4-beta-xylanase [Fusarium graminearum PH-1]

    See identical proteins and their annotated locations for XP_011325940.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    A0A0E0SJD3, I1S3C6
    UniProtKB/TrEMBL
    A0A1I9FPA3, A4UVN0
    Conserved Domains (2) summary
    smart00236
    Location:21 → 52
    fCBD; Fungal-type cellulose-binding domain
    pfam00331
    Location:80 → 376
    Glyco_hydro_10; Glycosyl hydrolase family 10
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
I1S3C6.1

Gene LinkOut

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Molecular Biology Databases
Research Materials