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Oscar osteoclast associated receptor [ Mus musculus (house mouse) ]

Gene ID: 232790, updated on 11-Nov-2024

Summary

Official Symbol
Oscarprovided by MGI
Official Full Name
osteoclast associated receptorprovided by MGI
Primary source
MGI:MGI:2179720
See related
Ensembl:ENSMUSG00000054594 AllianceGenome:MGI:2179720
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
mOSCAR; mOSCAR-M1; mOSCAR-M2; mOSCAR-M3
Summary
Enables collagen receptor activity. Acts upstream of or within Fc-gamma receptor signaling pathway; multinuclear osteoclast differentiation; and positive regulation of bone resorption. Located in cell surface. Is expressed in testis. Orthologous to human OSCAR (osteoclast associated Ig-like receptor). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in frontal lobe adult (RPKM 1.4), testis adult (RPKM 1.4) and 19 other tissues See more
Orthologs
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Genomic context

See Oscar in Genome Data Viewer
Location:
7 A1; 7 2.08 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (3612812..3619156, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (3609813..3616157, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 35037 Neighboring gene predicted gene, 45920 Neighboring gene STARR-seq mESC enhancer starr_17907 Neighboring gene T cell-interacting, activating receptor on myeloid cells 1 Neighboring gene STARR-seq mESC enhancer starr_17908 Neighboring gene STARR-seq mESC enhancer starr_17909 Neighboring gene STARR-seq mESC enhancer starr_17910 Neighboring gene STARR-seq mESC enhancer starr_17911 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:3581200-3581309 Neighboring gene STARR-positive B cell enhancer ABC_E2811 Neighboring gene NADH:ubiquinone oxidoreductase subunit A3 Neighboring gene TCF3 (E2A) fusion partner

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (5) 
  • Targeted (3)  1 citation

Pathways from PubChem

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables collagen receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables collagen receptor activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables collagen receptor activity ISO
Inferred from Sequence Orthology
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in cell surface IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
osteoclast-associated immunoglobulin-like receptor
Names
ocl178
osteoclast-associated receptor OSCAR

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001290377.1NP_001277306.1  osteoclast-associated immunoglobulin-like receptor isoform 2 precursor

    See identical proteins and their annotated locations for NP_001277306.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice junction at the 3' end of the first exon compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
    Source sequence(s)
    AF391159, AF391160
    Consensus CDS
    CCDS71872.1
    UniProtKB/Swiss-Prot
    Q8VBT3, Q8VHT9
    UniProtKB/TrEMBL
    B2RQ61
    Related
    ENSMUSP00000104285.2, ENSMUST00000108645.8
    Conserved Domains (1) summary
    cl11960
    Location:30123
    Ig; Immunoglobulin domain
  2. NM_175632.3NP_783440.1  osteoclast-associated immunoglobulin-like receptor isoform 1 precursor

    See identical proteins and their annotated locations for NP_783440.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AF391160, AF391161
    Consensus CDS
    CCDS20718.1
    UniProtKB/TrEMBL
    B2RQ61
    Related
    ENSMUSP00000041306.8, ENSMUST00000039507.15
    Conserved Domains (1) summary
    cl11960
    Location:36129
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    3612812..3619156 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)