Vmn2r13 vomeronasal 2, receptor 13 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Vmn2r13provided by MGI
Official Full Name: vomeronasal 2, receptor 13provided by MGI
Primary source: MGI:MGI:3761379
See related: Ensembl:ENSMUSG00000091635 AllianceGenome:MGI:3761379
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Gm4867; EG231589
Summary: Predicted to enable G protein-coupled receptor activity. Predicted to be integral component of plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression: Low expression observed in reference dataset See more
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: 5 F; 5 53.24 cM

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	5	NC_000071.7 (109303889..109339973, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	5	NC_000071.6 (109156068..109192107, complement)

Chromosome 5 - NC_000071.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables G protein-coupled receptor activity	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

Go to the top of the page Help

Preferred Names: vomeronasal 2, receptor 13

Names: vomeronasal receptor Vmn2r13

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001104624.1 → NP_001098094.1 vomeronasal 2, receptor 13 isoform 2 precursor

Status: VALIDATED

Source sequence(s)

AC123748

Consensus CDS

CCDS51599.1

UniProtKB/TrEMBL

L7N1X2

Related

ENSMUSP00000052977.9, ENSMUST00000053253.10

Conserved Domains (3) summary

cd06365
Location:40 → 498

PBP1_Pheromone_receptor; Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily

pfam00003
Location:594 → 828

7tm_3; 7 transmembrane sweet-taste receptor of 3 GCPR

pfam07562
Location:507 → 559

NCD3G; Nine Cysteines Domain of family 3 GPCR
NM_001384974.1 → NP_001371903.1 vomeronasal 2, receptor 13 isoform 1 precursor

Status: VALIDATED

Source sequence(s)

AC123748

Conserved Domains (3) summary

cd15283
Location:579 → 829

7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors

cd06365
Location:45 → 498

PBP1_pheromone_receptor; Ligand-binding domain of the V2R pheromone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily

pfam07562
Location:506 → 559

NCD3G; Nine Cysteines Domain of family 3 GPCR

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

NC_000071.7 Reference GRCm39 C57BL/6J

Range

109303889..109339973 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_036165083.1 → XP_036020976.1 vomeronasal 2, receptor 13 isoform X3

Conserved Domains (2) summary

cd15283
Location:504 → 754

7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors

cl10011
Location:45 → 461

Periplasmic_Binding_Protein_type1; Type 1 periplasmic binding fold superfamily
XM_017320857.1 → XP_017176346.1 vomeronasal 2, receptor 13 isoform X1

Conserved Domains (3) summary

cd15283
Location:581 → 831

7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors

pfam07562
Location:508 → 561

NCD3G; Nine Cysteines Domain of family 3 GPCR

cd06365
Location:45 → 498

PBP1_pheromone_receptor; Ligand-binding domain of the V2R pheromone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily
XM_017320859.1 → XP_017176348.1 vomeronasal 2, receptor 13 isoform X2

Conserved Domains (2) summary

cd15283
Location:539 → 789

7tmC_V2R_pheromone; vomeronasal type-2 pheromone receptors, member of the class C family of seven-transmembrane G protein-coupled receptors

cd06365
Location:45 → 498

PBP1_pheromone_receptor; Ligand-binding domain of the V2R pheromone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily