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LPMP_201920 glycoside hydrolase, putative [ Leishmania panamensis ]

Gene ID: 22574401, updated on 17-May-2024

Summary

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Gene symbol
LPMP_201920
Gene description
glycoside hydrolase, putative
Locus tag
LPMP_201920
See related
TriTrypDB:LPMP_201920; VEuPathDB:LPMP_201920
Gene type
protein coding
RNA name
glycoside hydrolase, putative
RefSeq status
PROVISIONAL
Organism
Leishmania panamensis (strain: MHOM/PA/94/PSC-1)
Lineage
Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania guyanensis species complex
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Genomic context

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Location:
chromosome: 20
Exon count:
1
Sequence:
Chromosome: 20; NC_025866.1 (870869..874405, complement)

Chromosome 20 - NC_025866.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene ATP-dependent RNA helicase-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_025866.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of Leishmania panamensis: insights into genomics of the L. (Viannia) subgenus. Llanes A, et al. Sci Rep, 2015 Feb 24. PMID 25707621, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
glycoside hydrolase, putative
XP_010698393.1
  • TriTrypDB/GeneDB-style sysID: LpmP.20.1920

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_025866.1 Reference assembly

    Range
    870869..874405 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010700091.1 → XP_010698393.1  glycoside hydrolase, putative [Leishmania panamensis]

    See identical proteins and their annotated locations for XP_010698393.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A088S7Z3
    Conserved Domains (5) summary
    COG1554
    Location:383 → 863
    ATH1; Trehalose and maltose hydrolase (possible phosphorylase) [Carbohydrate transport and metabolism]
    pfam03632
    Location:490 → 818
    Glyco_hydro_65m; Glycosyl hydrolase family 65 central catalytic domain
    pfam03633
    Location:827 → 877
    Glyco_hydro_65C; Glycosyl hydrolase family 65, C-terminal domain
    pfam13419
    Location:934 → 1105
    HAD_2; Haloacid dehalogenase-like hydrolase
    cl21460
    Location:1018 → 1100
    HAD_like; Haloacid Dehalogenase-like Hydrolases
Nucleotide Protein
Heading Accession and Version

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