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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001172113.2 → NP_001165584.1 E3 ubiquitin-protein ligase TRAF7 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AC132367
- Consensus CDS
-
CCDS50014.1
- UniProtKB/Swiss-Prot
- Q922B6, Q99JV3
- UniProtKB/TrEMBL
-
F8WJF7
- Related
- ENSMUSP00000134759.2, ENSMUST00000176652.8
- Conserved Domains (6) summary
-
- cl17044
Location:281 → 321
- DD_cGKI; Dimerization/Docking domain of Cyclic GMP-dependent Protein Kinase I
- smart00184
Location:130 → 162
- RING; Ring finger
- COG2319
Location:379 → 667
- WD40; WD40 repeat [General function prediction only]
- cd00200
Location:387 → 667
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
- sd00039
Location:442 → 476
- 7WD40; WD40 repeat [structural motif]
- cl19105
Location:206 → 279
- Sina; Seven in absentia (Sina) protein family, C-terminal substrate binding domain; composed of the Drosophila Sina protein, the mammalian Sina homolog (Siah), the plant protein SINAT5, and similar proteins. Sina, Siah and SINAT5 are RING-containing proteins ...
-
NM_001172114.2 → NP_001165585.1 E3 ubiquitin-protein ligase TRAF7 isoform 2
See identical proteins and their annotated locations for NP_001165585.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks an alternate in-frame exon, compared to variant 1. The resulting isoform (2) lacks an internal segment, compared to isoform 1.
- Source sequence(s)
-
AC132367
- Consensus CDS
-
CCDS50015.1
- UniProtKB/Swiss-Prot
- Q922B6, Q99JV3
- UniProtKB/TrEMBL
-
Q8C2K8
- Related
- ENSMUSP00000135267.2, ENSMUST00000176353.8
- Conserved Domains (6) summary
-
- cl17044
Location:241 → 281
- DD_cGKI; Dimerization/Docking domain of Cyclic GMP-dependent Protein Kinase I
- smart00184
Location:92 → 124
- RING; Ring finger
- COG2319
Location:339 → 627
- WD40; WD40 repeat [General function prediction only]
- cd00200
Location:347 → 627
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
- sd00039
Location:402 → 436
- 7WD40; WD40 repeat [structural motif]
- cl19105
Location:168 → 239
- Sina; Seven in absentia (Sina) protein family, C-terminal substrate binding domain; composed of the Drosophila Sina protein, the mammalian Sina homolog (Siah), the plant protein SINAT5, and similar proteins. Sina, Siah and SINAT5 are RING-containing proteins ...
-
NM_001415151.1 → NP_001402080.1 E3 ubiquitin-protein ligase TRAF7 isoform 3
Status: VALIDATED
- Source sequence(s)
-
AC132367
-
NM_153792.2 → NP_722487.2 E3 ubiquitin-protein ligase TRAF7 isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) uses an alternate splice site and a downstream start codon, compared to variant 1. Isoform 3 has a shorter N-terminus, compared to isoform 1.
- Source sequence(s)
-
AC132367
- UniProtKB/Swiss-Prot
- Q922B6, Q99JV3
- Conserved Domains (6) summary
-
- cl17044
Location:254 → 294
- DD_cGKI; Dimerization/Docking domain of Cyclic GMP-dependent Protein Kinase I
- smart00184
Location:103 → 135
- RING; Ring finger
- COG2319
Location:352 → 640
- WD40; WD40 repeat [General function prediction only]
- cd00200
Location:360 → 640
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
- sd00039
Location:415 → 449
- 7WD40; WD40 repeat [structural motif]
- cl19105
Location:179 → 252
- Sina; Seven in absentia (Sina) protein family, C-terminal substrate binding domain; composed of the Drosophila Sina protein, the mammalian Sina homolog (Siah), the plant protein SINAT5, and similar proteins. Sina, Siah and SINAT5 are RING-containing proteins ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000083.7 Reference GRCm39 C57BL/6J
- Range
-
24727824..24746912 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)