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Txn1 thioredoxin 1 [ Mus musculus (house mouse) ]

Gene ID: 22166, updated on 14-Nov-2024

Summary

Official Symbol
Txn1provided by MGI
Official Full Name
thioredoxin 1provided by MGI
Primary source
MGI:MGI:98874
See related
Ensembl:ENSMUSG00000028367 AllianceGenome:MGI:98874
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
ADF; Txn; Trx1
Summary
Enables protein-disulfide reductase activity. Acts upstream of or within cell redox homeostasis; negative regulation of protein export from nucleus; and negative regulation of transcription by RNA polymerase II. Located in cytosol and nucleus. Is expressed in several structures, including central nervous system; skeleton; and submandibular gland primordium. Orthologous to human TXN (thioredoxin). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in large intestine adult (RPKM 220.8), placenta adult (RPKM 209.4) and 27 other tissues See more
Orthologs
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Genomic context

See Txn1 in Genome Data Viewer
Location:
4 B3; 4 31.87 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (57943373..57956411, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (57943373..57956411, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_10351 Neighboring gene predicted gene, 42292 Neighboring gene predicted gene, 52700 Neighboring gene STARR-seq mESC enhancer starr_10352 Neighboring gene STARR-positive B cell enhancer ABC_E2113 Neighboring gene predicted gene, 35344 Neighboring gene thioredoxin domain containing 8

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 
  • Targeted (4)  1 citation

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables enzyme binding ISO
Inferred from Sequence Orthology
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein homodimerization activity IEA
Inferred from Electronic Annotation
more info
 
enables protein homodimerization activity ISO
Inferred from Sequence Orthology
more info
 
enables protein-disulfide reductase (NAD(P)H) activity IEA
Inferred from Electronic Annotation
more info
 
enables protein-disulfide reductase (NAD(P)H) activity ISO
Inferred from Sequence Orthology
more info
 
enables protein-disulfide reductase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables protein-disulfide reductase activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within cell redox homeostasis IDA
Inferred from Direct Assay
more info
PubMed 
involved_in cell redox homeostasis ISO
Inferred from Sequence Orthology
more info
 
involved_in cellular detoxification of hydrogen peroxide IEA
Inferred from Electronic Annotation
more info
 
involved_in cellular detoxification of hydrogen peroxide ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within negative regulation of protein export from nucleus IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within negative regulation of transcription by RNA polymerase II IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in positive regulation of DNA binding ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of DNA binding ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in positive regulation of peptidyl-cysteine S-nitrosylation IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of peptidyl-cysteine S-nitrosylation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of peptidyl-serine phosphorylation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction IEA
Inferred from Electronic Annotation
more info
 
involved_in response to nitric oxide IEA
Inferred from Electronic Annotation
more info
 
involved_in response to nitric oxide ISO
Inferred from Sequence Orthology
more info
 
involved_in response to radiation ISO
Inferred from Sequence Orthology
more info
 
involved_in response to radiation ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
located_in axon ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in cytosol IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in cytosol TAS
Traceable Author Statement
more info
 
located_in dendrite ISO
Inferred from Sequence Orthology
more info
 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
located_in extracellular region ISO
Inferred from Sequence Orthology
more info
 
located_in mitochondrion HDA PubMed 
located_in neuronal cell body ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
thioredoxin
Names
ATL-derived factor
trx

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_011660.3NP_035790.1  thioredoxin

    See identical proteins and their annotated locations for NP_035790.1

    Status: VALIDATED

    Source sequence(s)
    AK007537, AL929406
    Consensus CDS
    CCDS18207.1
    UniProtKB/Swiss-Prot
    P10639, Q52KC4, Q9D8R0
    Related
    ENSMUSP00000030051.6, ENSMUST00000030051.6
    Conserved Domains (1) summary
    pfam00085
    Location:4103
    Thioredoxin

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    57943373..57956411 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)