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Prr14l proline rich 14-like [ Mus musculus (house mouse) ]

Gene ID: 215476, updated on 2-Nov-2024

Summary

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Official Symbol
Prr14lprovided by MGI
Official Full Name
proline rich 14-likeprovided by MGI
Primary source
MGI:MGI:2443658
See related
Ensembl:ENSMUSG00000054280 AllianceGenome:MGI:2443658
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Prl14l; 6030436E02Rik; C330019G07Rik
Summary
Is expressed in medial ganglionic eminence. Orthologous to human PRR14L (proline rich 14 like). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in thymus adult (RPKM 5.3), ovary adult (RPKM 4.2) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Prr14l in Genome Data Viewer
Location:
5 B1; 5 17.33 cM
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (32946551..33011679, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (32789207..32854337, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene 2420 Neighboring gene predicted gene, 52771 Neighboring gene STARR-seq mESC enhancer starr_12804 Neighboring gene phosphatidylserine decarboxylase Neighboring gene STARR-positive B cell enhancer ABC_E4751 Neighboring gene ribosomal protein L37 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E10312 Neighboring gene DEP domain containing 5 Neighboring gene predicted gene, 24003 Neighboring gene STARR-seq mESC enhancer starr_12808 Neighboring gene STARR-seq mESC enhancer starr_12809 Neighboring gene STARR-seq mESC enhancer starr_12810 Neighboring gene predicted gene, 57845 Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Expression of the novel gene embryo implantation factor 2 (EMO2) in the mouse uterus at the implantation sites. Sun Z, et al. Fertil Steril, 2009 May. PMID 18384781
  2. The Evf2 Ultraconserved Enhancer lncRNA Functionally and Spatially Organizes Megabase Distant Genes in the Developing Forebrain. Cajigas I, et al. Mol Cell, 2018 Sep 20. PMID 30146317, Free PMC Article
  3. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  4. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
  5. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
protein PRR14L

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_194340.2 → NP_919321.2  protein PRR14L

    See identical proteins and their annotated locations for NP_919321.2

    Status: VALIDATED

    Source sequence(s)
    AC108773, AC241622, AK134346, BC094374
    Consensus CDS
    CCDS19195.2
    UniProtKB/TrEMBL
    E9Q7C4
    Related
    ENSMUSP00000113259.3, ENSMUST00000120129.9
    Conserved Domains (1) summary
    pfam15386
    Location:1842 → 1895
    Tantalus; Drosophila Tantalus-like

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    32946551..33011679 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006503842.5 → XP_006503905.1  protein PRR14L isoform X8

    Conserved Domains (1) summary
    pfam15386
    Location:1714 → 1767
    Tantalus; Drosophila Tantalus-like

  2. XM_017320798.3 → XP_017176287.1  protein PRR14L isoform X7

    Conserved Domains (1) summary
    pfam15386
    Location:1757 → 1810
    Tantalus; Drosophila Tantalus-like

  3. XM_006503836.5 → XP_006503899.1  protein PRR14L isoform X2

    See identical proteins and their annotated locations for XP_006503899.1

    UniProtKB/TrEMBL
    E9Q7C4
    Conserved Domains (1) summary
    pfam15386
    Location:1842 → 1895
    Tantalus; Drosophila Tantalus-like

  4. XM_017320791.3 → XP_017176280.1  protein PRR14L isoform X1

    Conserved Domains (1) summary
    pfam15386
    Location:1885 → 1938
    Tantalus; Drosophila Tantalus-like

  5. XM_017320792.3 → XP_017176281.1  protein PRR14L isoform X1

    Conserved Domains (1) summary
    pfam15386
    Location:1885 → 1938
    Tantalus; Drosophila Tantalus-like

  6. XM_036164991.1 → XP_036020884.1  protein PRR14L isoform X1

    Conserved Domains (1) summary
    pfam15386
    Location:1885 → 1938
    Tantalus; Drosophila Tantalus-like

  7. XM_006503843.5 → XP_006503906.1  protein PRR14L isoform X9

    Conserved Domains (1) summary
    pfam15386
    Location:1695 → 1748
    Tantalus; Drosophila Tantalus-like

  8. XM_030254361.2 → XP_030110221.1  protein PRR14L isoform X10

    Conserved Domains (1) summary
    pfam15386
    Location:1636 → 1689
    Tantalus; Drosophila Tantalus-like

  9. XM_030254360.1 → XP_030110220.1  protein PRR14L isoform X2

    UniProtKB/TrEMBL
    E9Q7C4
    Conserved Domains (1) summary
    pfam15386
    Location:1842 → 1895
    Tantalus; Drosophila Tantalus-like

  10. XM_017320793.1 → XP_017176282.1  protein PRR14L isoform X1

    Conserved Domains (1) summary
    pfam15386
    Location:1885 → 1938
    Tantalus; Drosophila Tantalus-like

  11. XM_017320794.3 → XP_017176283.1  protein PRR14L isoform X3

  12. XM_017320797.3 → XP_017176286.1  protein PRR14L isoform X5

  13. XM_017320795.3 → XP_017176284.1  protein PRR14L isoform X4

  14. XM_017320796.3 → XP_017176285.1  protein PRR14L isoform X6

Nucleotide Protein Strain
Heading Accession and Version

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