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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001291003.1 → NP_001277932.1 astacin-like metalloendopeptidase isoform a precursor
See identical proteins and their annotated locations for NP_001277932.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the shorter transcript but encodes the longer isoform (a).
- Source sequence(s)
-
BC064729, DV649054, DV662582
- Consensus CDS
-
CCDS71138.1
- UniProtKB/Swiss-Prot
- A2AHU0, A2AHU1, G7Z016, G7Z017, G7Z018, G7Z019, Q6HA09, Q8BMA1
- Related
- ENSMUSP00000087102.4, ENSMUST00000089673.10
- Conserved Domains (2) summary
-
- pfam01400
Location:92 → 282
- Astacin; Astacin (Peptidase family M12A)
- cl00064
Location:100 → 281
- ZnMc; Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which ...
-
NM_172539.3 → NP_766127.1 astacin-like metalloendopeptidase isoform b
See identical proteins and their annotated locations for NP_766127.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) contains an alternate 5' terminal exon, and it thus differs in its 5' UTR and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (b) is shorter at the N-terminus, compared to isoform a.
- Source sequence(s)
-
AK033037, AL845368, DV662582
- Consensus CDS
-
CCDS16700.1
- UniProtKB/Swiss-Prot
-
Q6HA09
- Related
- ENSMUSP00000054456.3, ENSMUST00000059839.9
- Conserved Domains (2) summary
-
- pfam01400
Location:71 → 261
- Astacin; Astacin (Peptidase family M12A)
- cl00064
Location:79 → 260
- ZnMc; Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000068.8 Reference GRCm39 C57BL/6J
- Range
-
127180559..127199575
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)