U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC21410413 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [ Morus notabilis ]

Gene ID: 21410413, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC21410413
Gene description
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9
Locus tag
L484_027805
Gene type
protein coding
RefSeq status
MODEL
Organism
Morus notabilis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Moreae; Morus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC21410413 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current ASM41409v2 (GCF_000414095.1) Unplaced Scaffold NW_010362482.1 (1831276..1836537)

NW_010362482.1Genomic Context describing neighboring genes Neighboring gene putative potassium transporter 12 Neighboring gene potassium transporter 6 Neighboring gene uncharacterized LOC21410414 Neighboring gene uncharacterized LOC21410415

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_010362482 Unplaced Scaffold Reference ASM41409v2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9
Names
putative alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Morus notabilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM41409v2

Genomic

  1. NW_010362482.1 Reference ASM41409v2

    Range
    1831276..1836537
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010102190.2 → XP_010100492.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

    See identical proteins and their annotated locations for XP_010100492.1

    UniProtKB/TrEMBL
    W9RNH0
    Conserved Domains (3) summary
    cd03788
    Location:62 → 545
    GT1_TPS; Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a ...
    PLN02205
    Location:1 → 843
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]
    pfam02358
    Location:595 → 830
    Trehalose_PPase; Trehalose-phosphatase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases