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LOC21400673 pentatricopeptide repeat-containing protein At3g46610 [ Morus notabilis ]

Gene ID: 21400673, updated on 21-Dec-2023

Summary

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Gene symbol
LOC21400673
Gene description
pentatricopeptide repeat-containing protein At3g46610
Locus tag
L484_017686
Gene type
protein coding
RefSeq status
MODEL
Organism
Morus notabilis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Moreae; Morus
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Genomic context

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See LOC21400673 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
100 current ASM41409v2 (GCF_000414095.1) Unplaced Scaffold NW_010367753.1 (482460..485338, complement)

NW_010367753.1Genomic Context describing neighboring genes Neighboring gene early nodulin-like protein 1 Neighboring gene uncharacterized membrane protein At3g27390 Neighboring gene BAG family molecular chaperone regulator 3 Neighboring gene class I heat shock protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010367753 Unplaced Scaffold Reference ASM41409v2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pentatricopeptide repeat-containing protein At3g46610

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Morus notabilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM41409v2

Genomic

  1. NW_010367753.1 Reference ASM41409v2

    Range
    482460..485338 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010113356.2 → XP_010111658.1  pentatricopeptide repeat-containing protein At3g46610

    See identical proteins and their annotated locations for XP_010111658.1

    UniProtKB/TrEMBL
    W9SJ05
    Conserved Domains (5) summary
    TIGR00756
    Location:632 → 665
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:563 → 590
    PPR; PPR repeat [structural motif]
    pfam00748
    Location:97 → 211
    Calpain_inhib; Calpain inhibitor
    pfam13041
    Location:629 → 678
    PPR_2; PPR repeat family
    pfam13812
    Location:491 → 524
    PPR_3; Pentatricopeptide repeat domain
Nucleotide Protein
Heading Accession and Version

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