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Tcap titin-cap [ Mus musculus (house mouse) ]

Gene ID: 21393, updated on 2-Nov-2024

Summary

Official Symbol
Tcapprovided by MGI
Official Full Name
titin-capprovided by MGI
Primary source
MGI:MGI:1330233
See related
Ensembl:ENSMUSG00000007877 AllianceGenome:MGI:1330233
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to enable several functions, including BMP binding activity; cytoskeletal protein binding activity; and titin Z domain binding activity. Predicted to be a structural constituent of muscle. Involved in adult heart development; otic vesicle formation; and somitogenesis. Located in Z disc. Is expressed in embryo; heart; otocyst; tail somite; and trunk somite. Used to study autosomal recessive limb-girdle muscular dystrophy type 2G. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy type 2G and hypertrophic cardiomyopathy 25. Orthologous to human TCAP (titin-cap). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in heart adult (RPKM 497.5), mammary gland adult (RPKM 96.5) and 1 other tissue See more
Orthologs
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Genomic context

See Tcap in Genome Data Viewer
Location:
11 D; 11 61.75 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (98274637..98275779)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (98383811..98384953)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700003D09 gene Neighboring gene protein phosphatase 1, regulatory inhibitor subunit 1B Neighboring gene STARR-positive B cell enhancer ABC_E7055 Neighboring gene STARR-positive B cell enhancer ABC_E7056 Neighboring gene StAR related lipid transfer domain containing 3 Neighboring gene phenylethanolamine-N-methyltransferase Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:98254740-98254849 Neighboring gene post-GPI attachment to proteins 3 Neighboring gene STARR-seq mESC enhancer starr_30667

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 
  • Targeted (2)  1 citation

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables BMP binding IEA
Inferred from Electronic Annotation
more info
 
enables BMP binding ISO
Inferred from Sequence Orthology
more info
 
enables FATZ binding IEA
Inferred from Electronic Annotation
more info
 
enables FATZ binding ISO
Inferred from Sequence Orthology
more info
 
enables molecular adaptor activity ISO
Inferred from Sequence Orthology
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein-macromolecule adaptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables protein-macromolecule adaptor activity IEA
Inferred from Electronic Annotation
more info
 
enables protein-macromolecule adaptor activity ISO
Inferred from Sequence Orthology
more info
 
enables structural constituent of muscle IBA
Inferred from Biological aspect of Ancestor
more info
 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 
enables structural constituent of muscle ISO
Inferred from Sequence Orthology
more info
 
enables titin Z domain binding IEA
Inferred from Electronic Annotation
more info
 
enables titin Z domain binding ISO
Inferred from Sequence Orthology
more info
 
enables titin binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables titin binding IEA
Inferred from Electronic Annotation
more info
 
enables titin binding ISO
Inferred from Sequence Orthology
more info
 
enables transmembrane transporter binding IEA
Inferred from Electronic Annotation
more info
 
enables transmembrane transporter binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in adult heart development IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in adult heart development ISO
Inferred from Sequence Orthology
more info
 
involved_in cardiac muscle cell development ISO
Inferred from Sequence Orthology
more info
 
involved_in cardiac muscle contraction IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in cardiac muscle contraction IEA
Inferred from Electronic Annotation
more info
 
involved_in cardiac muscle contraction ISO
Inferred from Sequence Orthology
more info
 
involved_in cardiac muscle hypertrophy ISO
Inferred from Sequence Orthology
more info
 
involved_in cardiac muscle hypertrophy in response to stress IEA
Inferred from Electronic Annotation
more info
 
involved_in cardiac muscle hypertrophy in response to stress ISO
Inferred from Sequence Orthology
more info
 
involved_in cardiac muscle tissue morphogenesis IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in cardiac muscle tissue morphogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in cardiac muscle tissue morphogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in cardiac myofibril assembly IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in cardiac myofibril assembly IEA
Inferred from Electronic Annotation
more info
 
involved_in cardiac myofibril assembly ISO
Inferred from Sequence Orthology
more info
 
involved_in detection of muscle stretch IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in detection of muscle stretch IEA
Inferred from Electronic Annotation
more info
 
involved_in detection of muscle stretch ISO
Inferred from Sequence Orthology
more info
 
involved_in otic vesicle formation IEP
Inferred from Expression Pattern
more info
PubMed 
acts_upstream_of_or_within sarcomere organization ISO
Inferred from Sequence Orthology
more info
PubMed 
involved_in sarcomere organization ISO
Inferred from Sequence Orthology
more info
 
involved_in sarcomerogenesis IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in sarcomerogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in sarcomerogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in skeletal muscle contraction IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in skeletal muscle contraction IEA
Inferred from Electronic Annotation
more info
 
involved_in skeletal muscle myosin thick filament assembly IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in skeletal muscle myosin thick filament assembly IEA
Inferred from Electronic Annotation
more info
 
involved_in skeletal muscle myosin thick filament assembly ISO
Inferred from Sequence Orthology
more info
 
involved_in skeletal muscle thin filament assembly IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in skeletal muscle thin filament assembly IEA
Inferred from Electronic Annotation
more info
 
involved_in skeletal muscle thin filament assembly ISO
Inferred from Sequence Orthology
more info
 
involved_in somitogenesis IEP
Inferred from Expression Pattern
more info
PubMed 
Component Evidence Code Pubs
located_in I band IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in Z disc IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in Z disc IDA
Inferred from Direct Assay
more info
PubMed 
located_in Z disc ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
telethonin
Names
titin cap protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_011540.2NP_035670.2  telethonin

    See identical proteins and their annotated locations for NP_035670.2

    Status: VALIDATED

    Source sequence(s)
    AJ223854
    Consensus CDS
    CCDS25346.1
    UniProtKB/Swiss-Prot
    O70548
    UniProtKB/TrEMBL
    O70549, Q545G3
    Related
    ENSMUSP00000008021.3, ENSMUST00000008021.3
    Conserved Domains (1) summary
    pfam09470
    Location:17167
    Telethonin; Telethonin protein

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    98274637..98275779
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)