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Bend7 BEN domain containing 7 [ Mus musculus (house mouse) ]

Gene ID: 209645, updated on 2-Nov-2024

Summary

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Official Symbol
Bend7provided by MGI
Official Full Name
BEN domain containing 7provided by MGI
Primary source
MGI:MGI:2443100
See related
Ensembl:ENSMUSG00000048186 AllianceGenome:MGI:2443100
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1110017O21Rik; E130319B15Rik
Summary
Predicted to enable DNA binding activity. Is expressed in ductus deferens; metanephros; prostate gland; and testis. Orthologous to human BEND7 (BEN domain containing 7). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in large intestine adult (RPKM 5.2), lung adult (RPKM 3.5) and 23 other tissues See more
Orthologs
human all
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Genomic context

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See Bend7 in Genome Data Viewer
Location:
2 A1; 2 2.88 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (4722593..4807035)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (4717787..4802224)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_03542 Neighboring gene pre-mRNA processing factor 18 Neighboring gene STARR-seq mESC enhancer starr_03543 Neighboring gene STARR-seq mESC enhancer starr_03544 Neighboring gene ribosomal protein L22 pseudogene Neighboring gene predicted gene, 36389 Neighboring gene protein regulator of cytokinesis 1 pseudogene Neighboring gene selenophosphate synthetase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
  2. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
  3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
BEN domain-containing protein 7

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001190400.1 → NP_001177329.1  BEN domain-containing protein 7 isoform 2

    See identical proteins and their annotated locations for NP_001177329.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 3' coding region, compared to variant 1. This results in a shorter protein (isoform 2), compared to isoform 1.
    Source sequence(s)
    AK053896, AL807778, AL928550
    Consensus CDS
    CCDS70974.1
    UniProtKB/TrEMBL
    B7ZMX8
    Related
    ENSMUSP00000139220.2, ENSMUST00000184139.8
    Conserved Domains (1) summary
    pfam10523
    Location:312 → 391
    BEN; BEN domain

  2. NM_178663.4 → NP_848778.1  BEN domain-containing protein 7 isoform 1

    See identical proteins and their annotated locations for NP_848778.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AK030428, AL807778, AL928550
    Consensus CDS
    CCDS15658.1
    UniProtKB/Swiss-Prot
    Q4VAD9, Q6PHN3, Q8BPJ4, Q8BSV3, Q8C973
    UniProtKB/TrEMBL
    B7ZMX8, Q0VE44
    Related
    ENSMUSP00000052458.7, ENSMUST00000056914.7
    Conserved Domains (1) summary
    pfam10523
    Location:312 → 391
    BEN; BEN domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    4722593..4807035
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036160210.1 → XP_036016103.1  BEN domain-containing protein 7 isoform X1

    UniProtKB/TrEMBL
    B7ZMX8
    Conserved Domains (1) summary
    pfam10523
    Location:284 → 365
    BEN; BEN domain

  2. XM_036160211.1 → XP_036016104.1  BEN domain-containing protein 7 isoform X2

    UniProtKB/TrEMBL
    B7ZMX8
    Conserved Domains (1) summary
    pfam10523
    Location:284 → 365
    BEN; BEN domain

  3. XM_006497445.3 → XP_006497508.1  BEN domain-containing protein 7 isoform X3

    See identical proteins and their annotated locations for XP_006497508.1

    UniProtKB/TrEMBL
    B7ZMX8
    Conserved Domains (1) summary
    smart01025
    Location:259 → 343
    BEN; The BEN domain is found in diverse animal proteins

RNA

  1. XR_004939300.1 RNA Sequence

  2. XR_004939303.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8BSV3.1 GenPept UniProtKB/Swiss-Prot:Q8BSV3

Gene LinkOut

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