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Triqk triple QxxK/R motif containing [ Mus musculus (house mouse) ]

Gene ID: 208820, updated on 2-Nov-2024

Summary

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Official Symbol
Triqkprovided by MGI
Official Full Name
triple QxxK/R motif containingprovided by MGI
Primary source
MGI:MGI:3650048
See related
Ensembl:ENSMUSG00000055963 AllianceGenome:MGI:3650048
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm11818; C130086A10
Summary
Predicted to be located in endoplasmic reticulum membrane. Is expressed in several structures, including genitourinary system; heart; liver; lung; and spleen. Orthologous to human TRIQK (triple QxxK/R motif containing). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in CNS E18 (RPKM 3.7), bladder adult (RPKM 2.9) and 17 other tissues See more
Orthologs
human all
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Genomic context

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See Triqk in Genome Data Viewer
Location:
4 A1; 4 5.58 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (12906837..12981485)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (12906837..12981485)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 52759 Neighboring gene STARR-seq mESC enhancer starr_09614 Neighboring gene STARR-seq mESC enhancer starr_09615 Neighboring gene predicted gene, 57728 Neighboring gene STARR-seq mESC enhancer starr_09616 Neighboring gene STARR-seq mESC enhancer starr_09617 Neighboring gene STARR-seq mESC enhancer starr_09619 Neighboring gene STARR-seq mESC enhancer starr_09620 Neighboring gene STARR-seq mESC enhancer starr_09621 Neighboring gene predicted gene 11820 Neighboring gene predicted gene, 46847

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. TRIQK, a novel family of small proteins localized to the endoplasmic reticulum membrane, is conserved across vertebrates. Onuma Y, et al. Zoolog Sci, 2008 Jul. PMID 18828657
  2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
triple QxxK/R motif-containing protein
Names
protein TRIQK
triple repetitive-sequence of QXXK/R protein homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001171801.1 → NP_001165272.1  triple QxxK/R motif-containing protein

    See identical proteins and their annotated locations for NP_001165272.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AL808105
    Consensus CDS
    CCDS71348.1
    UniProtKB/Swiss-Prot
    B2B9E1
    Related
    ENSMUSP00000139205.2, ENSMUST00000143186.8
    Conserved Domains (1) summary
    pfam15168
    Location:1 → 52
    TRIQK; Triple QxxK/R motif-containing protein family

  2. NM_173746.3 → NP_776107.2  triple QxxK/R motif-containing protein

    See identical proteins and their annotated locations for NP_776107.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AL808105
    Consensus CDS
    CCDS71348.1
    UniProtKB/Swiss-Prot
    B2B9E1
    Related
    ENSMUSP00000138966.2, ENSMUST00000183345.2
    Conserved Domains (1) summary
    pfam15168
    Location:1 → 52
    TRIQK; Triple QxxK/R motif-containing protein family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    12906837..12981485
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B2B9E1.1 GenPept UniProtKB/Swiss-Prot:B2B9E1

Gene LinkOut

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