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TSNARE1 t-SNARE domain containing 1 [ Homo sapiens (human) ]

Gene ID: 203062, updated on 7-Apr-2024

Summary

Official Symbol
TSNARE1provided by HGNC
Official Full Name
t-SNARE domain containing 1provided by HGNC
Primary source
HGNC:HGNC:26437
See related
Ensembl:ENSG00000171045 AllianceGenome:HGNC:26437
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in intracellular protein transport; vesicle docking; and vesicle fusion. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in endomembrane system. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in skin (RPKM 3.2), ovary (RPKM 2.2) and 25 other tissues See more
Orthologs
NEW
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Try the new Transcript table

Genomic context

Location:
8q24.3
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (142212080..142407029, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (143351850..143548446, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (143293441..143484543, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375792 Neighboring gene Sharpr-MPRA regulatory region 1162 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143283162-143283882 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143284603-143285322 Neighboring gene long intergenic non-protein coding RNA 51 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143300684-143301572 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143341408-143341908 Neighboring gene RNA, 7SL, cytoplasmic 260, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143375399-143375900 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28057 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28058 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28059 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143419370-143420072 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:143425450-143425965 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:143424933-143425449 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:143436639-143437406 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143441158-143441658 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28060 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28061 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28062 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:143457662-143458237 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:143458238-143458812 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143477973-143478474 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19594 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:143484673-143485448 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143491197-143491875 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:143497207-143498198 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:143498199-143499188 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143508526-143509300 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143515169-143515669 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19597 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19598 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:143534525-143535456 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:143535457-143536388 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:143545037-143545542 Neighboring gene uncharacterized LOC124902075 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:143550893-143551634 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:143551635-143552376 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:143553119-143553858 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19599 Neighboring gene adhesion G protein-coupled receptor B1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143587077-143587778 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143590247-143591018 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143591019-143591788 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143594079-143594580 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143594581-143595080 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143608973-143609474 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143626930-143627856 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143636183-143636684 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143636685-143637184 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143647608-143648108 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143653071-143653734 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143656141-143656686 Neighboring gene maestro heat like repeat family member 4, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Phenotypes

EBI GWAS Catalog

Description
Biological insights from 108 schizophrenia-associated genetic loci.
EBI GWAS Catalog
Genome-wide association analysis identifies 13 new risk loci for schizophrenia.
EBI GWAS Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • FLJ31164, MGC142116

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables SNAP receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables SNARE binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in intracellular protein transport IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in vesicle docking IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in vesicle fusion IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
part_of SNARE complex IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in endomembrane system IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
t-SNARE domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001291931.2NP_001278860.1  t-SNARE domain-containing protein 1 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks two consecutive in-frame exons in the 5' coding region, uses an alternate in-frame splice site in the central coding region, and also lacks two 3' exons but contains an alternate 3' terminal exon and thus differs in the 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (b) has a distinct C-terminus and is shorter than isoform a.
    Source sequence(s)
    AC103758, AI203371, BC065226, BF529741, BX115133, HY009343, HY264564
    Consensus CDS
    CCDS78369.1
    UniProtKB/TrEMBL
    E5RHT3, Q6P186
    Related
    ENSP00000429679.1, ENST00000519651.5
    Conserved Domains (2) summary
    pfam14523
    Location:46146
    Syntaxin_2; Syntaxin-like protein
    cl22856
    Location:197260
    SNARE; SNARE motif
  2. NM_001363740.2NP_001350669.1  t-SNARE domain-containing protein 1 isoform c

    Status: VALIDATED

    Source sequence(s)
    AC103758, AC134682, AK055726, BC126343
    Consensus CDS
    CCDS87630.1
    UniProtKB/TrEMBL
    A0AVG3, B7ZLB1, E5RG83
    Related
    ENSP00000303437.4, ENST00000307180.4
    Conserved Domains (3) summary
    cd15877
    Location:417480
    SNARE_TSNARE1; SNARE motif of TSNARE1
    pfam13873
    Location:124201
    Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain
    pfam14523
    Location:265366
    Syntaxin_2; Syntaxin-like protein
  3. NM_001366901.1NP_001353830.1  t-SNARE domain-containing protein 1 isoform d

    Status: VALIDATED

    Source sequence(s)
    AC103758, AC134682, BC143684
    UniProtKB/TrEMBL
    B7ZLB1
    Conserved Domains (3) summary
    cd15877
    Location:415478
    SNARE_TSNARE1; SNARE motif of TSNARE1
    pfam13873
    Location:124201
    Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain
    pfam14523
    Location:265365
    Syntaxin_2; Syntaxin-like protein
  4. NM_001366902.1NP_001353831.1  t-SNARE domain-containing protein 1 isoform e

    Status: VALIDATED

    Source sequence(s)
    AC103758, AC129918, AC134682
    UniProtKB/TrEMBL
    B7ZLB1
    Conserved Domains (2) summary
    pfam13873
    Location:124201
    Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain
    pfam14523
    Location:265366
    Syntaxin_2; Syntaxin-like protein
  5. NM_001366903.1NP_001353832.1  t-SNARE domain-containing protein 1 isoform f

    Status: VALIDATED

    Source sequence(s)
    AC103758, AC129918, AC134682
    UniProtKB/TrEMBL
    B7ZLB1
    Conserved Domains (2) summary
    pfam13873
    Location:124201
    Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain
    pfam14523
    Location:265365
    Syntaxin_2; Syntaxin-like protein
  6. NM_001366904.1NP_001353833.1  t-SNARE domain-containing protein 1 isoform g

    Status: VALIDATED

    Source sequence(s)
    AC103758, AC129918, AC134682, KC877361
    UniProtKB/TrEMBL
    B7ZLB1
    Conserved Domains (3) summary
    cd15877
    Location:416479
    SNARE_TSNARE1; SNARE motif of TSNARE1
    pfam13873
    Location:124201
    Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain
    pfam14523
    Location:265366
    Syntaxin_2; Syntaxin-like protein
  7. NM_145003.5NP_659440.2  t-SNARE domain-containing protein 1 isoform a

    See identical proteins and their annotated locations for NP_659440.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the shorter transcript but encodes the longer isoform (a).
    Source sequence(s)
    AC103758, AK055726, BC113556, HY009343
    Consensus CDS
    CCDS6384.1
    UniProtKB/Swiss-Prot
    B7ZLB0, Q14D03, Q96NA8
    UniProtKB/TrEMBL
    B7ZLB1
    Related
    ENSP00000428763.2, ENST00000524325.6
    Conserved Domains (3) summary
    cd15877
    Location:416479
    SNARE_TSNARE1; SNARE motif of TSNARE1
    pfam13873
    Location:124201
    Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain
    pfam14523
    Location:265366
    Syntaxin_2; Syntaxin-like protein

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    142212080..142407029 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047421491.1XP_047277447.1  t-SNARE domain-containing protein 1 isoform X37

  2. XM_047421483.1XP_047277439.1  t-SNARE domain-containing protein 1 isoform X28

  3. XM_047421488.1XP_047277444.1  t-SNARE domain-containing protein 1 isoform X35

  4. XM_047421487.1XP_047277443.1  t-SNARE domain-containing protein 1 isoform X34

  5. XM_047421484.1XP_047277440.1  t-SNARE domain-containing protein 1 isoform X29

  6. XM_047421486.1XP_047277442.1  t-SNARE domain-containing protein 1 isoform X33

  7. XM_047421485.1XP_047277441.1  t-SNARE domain-containing protein 1 isoform X32

  8. XM_011516912.3XP_011515214.1  t-SNARE domain-containing protein 1 isoform X5

    Conserved Domains (3) summary
    pfam13873
    Location:124198
    Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain
    pfam14523
    Location:265366
    Syntaxin_2; Syntaxin-like protein
    cl22856
    Location:416456
    SNARE; SNARE motif
  9. XM_047421473.1XP_047277429.1  t-SNARE domain-containing protein 1 isoform X18

  10. XM_017013179.2XP_016868668.1  t-SNARE domain-containing protein 1 isoform X31

    UniProtKB/TrEMBL
    B7ZLB1
  11. XM_047421480.1XP_047277436.1  t-SNARE domain-containing protein 1 isoform X25

  12. XM_047421475.1XP_047277431.1  t-SNARE domain-containing protein 1 isoform X20

  13. XM_047421476.1XP_047277432.1  t-SNARE domain-containing protein 1 isoform X21

  14. XM_047421481.1XP_047277437.1  t-SNARE domain-containing protein 1 isoform X26

  15. XM_011516921.2XP_011515223.1  t-SNARE domain-containing protein 1 isoform X30

    UniProtKB/TrEMBL
    B7ZLB1
    Conserved Domains (3) summary
    cd15877
    Location:416479
    SNARE_TSNARE1; SNARE motif of TSNARE1
    pfam13873
    Location:124198
    Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain
    pfam14523
    Location:265365
    Syntaxin_2; Syntaxin-like protein
  16. XM_047421482.1XP_047277438.1  t-SNARE domain-containing protein 1 isoform X27

  17. XM_047421459.1XP_047277415.1  t-SNARE domain-containing protein 1 isoform X3

  18. XM_047421472.1XP_047277428.1  t-SNARE domain-containing protein 1 isoform X17

  19. XM_047421466.1XP_047277422.1  t-SNARE domain-containing protein 1 isoform X11

  20. XM_047421474.1XP_047277430.1  t-SNARE domain-containing protein 1 isoform X19

    Related
    ENSP00000499343.1, ENST00000662555.1
  21. XM_047421461.1XP_047277417.1  t-SNARE domain-containing protein 1 isoform X6

  22. XM_047421471.1XP_047277427.1  t-SNARE domain-containing protein 1 isoform X16

  23. XM_047421462.1XP_047277418.1  t-SNARE domain-containing protein 1 isoform X7

  24. XM_047421479.1XP_047277435.1  t-SNARE domain-containing protein 1 isoform X24

  25. XM_047421478.1XP_047277434.1  t-SNARE domain-containing protein 1 isoform X23

  26. XM_047421477.1XP_047277433.1  t-SNARE domain-containing protein 1 isoform X22

  27. XM_047421470.1XP_047277426.1  t-SNARE domain-containing protein 1 isoform X15

  28. XM_047421469.1XP_047277425.1  t-SNARE domain-containing protein 1 isoform X14

  29. XM_047421468.1XP_047277424.1  t-SNARE domain-containing protein 1 isoform X13

  30. XM_047421460.1XP_047277416.1  t-SNARE domain-containing protein 1 isoform X4

  31. XM_047421465.1XP_047277421.1  t-SNARE domain-containing protein 1 isoform X10

  32. XM_047421464.1XP_047277420.1  t-SNARE domain-containing protein 1 isoform X9

  33. XM_047421457.1XP_047277413.1  t-SNARE domain-containing protein 1 isoform X1

  34. XM_047421463.1XP_047277419.1  t-SNARE domain-containing protein 1 isoform X8

  35. XM_047421458.1XP_047277414.1  t-SNARE domain-containing protein 1 isoform X2

  36. XM_047421467.1XP_047277423.1  t-SNARE domain-containing protein 1 isoform X12

  37. XM_047421490.1XP_047277446.1  t-SNARE domain-containing protein 1 isoform X36

  38. XM_047421489.1XP_047277445.1  t-SNARE domain-containing protein 1 isoform X36

  39. XM_011516924.2XP_011515226.1  t-SNARE domain-containing protein 1 isoform X38

    Conserved Domains (2) summary
    pfam13873
    Location:124198
    Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain
    pfam14523
    Location:265298
    Syntaxin_2; Syntaxin-like protein

RNA

  1. XR_007060718.1 RNA Sequence

  2. XR_007060717.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    143351850..143548446 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054359991.1XP_054215966.1  t-SNARE domain-containing protein 1 isoform X37

  2. XM_054359981.1XP_054215956.1  t-SNARE domain-containing protein 1 isoform X28

  3. XM_054359988.1XP_054215963.1  t-SNARE domain-containing protein 1 isoform X35

  4. XM_054359987.1XP_054215962.1  t-SNARE domain-containing protein 1 isoform X34

  5. XM_054359986.1XP_054215961.1  t-SNARE domain-containing protein 1 isoform X29

  6. XM_054359985.1XP_054215960.1  t-SNARE domain-containing protein 1 isoform X33

  7. XM_054359984.1XP_054215959.1  t-SNARE domain-containing protein 1 isoform X32

  8. XM_054359958.1XP_054215933.1  t-SNARE domain-containing protein 1 isoform X5

  9. XM_054359971.1XP_054215946.1  t-SNARE domain-containing protein 1 isoform X18

  10. XM_054359983.1XP_054215958.1  t-SNARE domain-containing protein 1 isoform X31

  11. XM_054359978.1XP_054215953.1  t-SNARE domain-containing protein 1 isoform X25

  12. XM_054359973.1XP_054215948.1  t-SNARE domain-containing protein 1 isoform X20

  13. XM_054359974.1XP_054215949.1  t-SNARE domain-containing protein 1 isoform X21

  14. XM_054359979.1XP_054215954.1  t-SNARE domain-containing protein 1 isoform X26

  15. XM_054359982.1XP_054215957.1  t-SNARE domain-containing protein 1 isoform X30

  16. XM_054359980.1XP_054215955.1  t-SNARE domain-containing protein 1 isoform X27

  17. XM_054359956.1XP_054215931.1  t-SNARE domain-containing protein 1 isoform X3

  18. XM_054359970.1XP_054215945.1  t-SNARE domain-containing protein 1 isoform X17

  19. XM_054359964.1XP_054215939.1  t-SNARE domain-containing protein 1 isoform X11

  20. XM_054359972.1XP_054215947.1  t-SNARE domain-containing protein 1 isoform X19

  21. XM_054359959.1XP_054215934.1  t-SNARE domain-containing protein 1 isoform X6

  22. XM_054359967.1XP_054215942.1  t-SNARE domain-containing protein 1 isoform X14

  23. XM_054359966.1XP_054215941.1  t-SNARE domain-containing protein 1 isoform X13

  24. XM_054359962.1XP_054215937.1  t-SNARE domain-containing protein 1 isoform X9

  25. XM_054359954.1XP_054215929.1  t-SNARE domain-containing protein 1 isoform X1

  26. XM_054359961.1XP_054215936.1  t-SNARE domain-containing protein 1 isoform X8

  27. XM_054359968.1XP_054215943.1  t-SNARE domain-containing protein 1 isoform X15

  28. XM_054359957.1XP_054215932.1  t-SNARE domain-containing protein 1 isoform X4

  29. XM_054359969.1XP_054215944.1  t-SNARE domain-containing protein 1 isoform X16

  30. XM_054359960.1XP_054215935.1  t-SNARE domain-containing protein 1 isoform X7

  31. XM_054359977.1XP_054215952.1  t-SNARE domain-containing protein 1 isoform X23

  32. XM_054359976.1XP_054215951.1  t-SNARE domain-containing protein 1 isoform X24

  33. XM_054359975.1XP_054215950.1  t-SNARE domain-containing protein 1 isoform X22

  34. XM_054359963.1XP_054215938.1  t-SNARE domain-containing protein 1 isoform X10

  35. XM_054359955.1XP_054215930.1  t-SNARE domain-containing protein 1 isoform X2

  36. XM_054359965.1XP_054215940.1  t-SNARE domain-containing protein 1 isoform X12

  37. XM_054359990.1XP_054215965.1  t-SNARE domain-containing protein 1 isoform X36

  38. XM_054359989.1XP_054215964.1  t-SNARE domain-containing protein 1 isoform X36

  39. XM_054359992.1XP_054215967.1  t-SNARE domain-containing protein 1 isoform X38

RNA

  1. XR_008487818.1 RNA Sequence