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GLB1 hypothetical protein [ Aureococcus anophagefferens ]

Gene ID: 20223323, updated on 28-Dec-2023

Summary

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Gene symbol
GLB1
Gene description
hypothetical protein
Locus tag
AURANDRAFT_61114
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Aureococcus anophagefferens (strain: CCMP1984)
Lineage
Eukaryota; Stramenopiles; Pelagophyceae; Pelagomonadales; Aureococcus
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Genomic context

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Location:
chromosome: Unknown
Exon count:
8

NW_008705562.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008705562.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics. Gobler CJ, et al. Proc Natl Acad Sci U S A, 2011 Mar 15. PMID 21368207, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_008705562.1 Reference assembly

    Range
    905335..912201 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009035199.1 → XP_009033447.1  hypothetical protein AURANDRAFT_61114 [Aureococcus anophagefferens]

    See identical proteins and their annotated locations for XP_009033447.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    F0XZ41
    Conserved Domains (6) summary
    cd04905
    Location:433 → 538
    ACT_CM-PDT; C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme
    pfam00703
    Location:1196 → 1297
    Glyco_hydro_2; Glycosyl hydrolases family 2
    pfam02837
    Location:998 → 1171
    Glyco_hydro_2_N; Glycosyl hydrolases family 2, sugar binding domain
    pfam14240
    Location:203 → 281
    YHYH; YHYH protein
    pfam16355
    Location:1615 → 1675
    DUF4982; Domain of unknown function (DUF4982)
    cl23725
    Location:1304 → 1553
    Glyco_hydro_1; Glycosyl hydrolase family 1
Nucleotide Protein
Heading Accession and Version

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