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TPP hypothetical protein [ Aureococcus anophagefferens ]

Gene ID: 20222313, updated on 28-Dec-2023

Summary

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Gene symbol
TPP
Gene description
hypothetical protein
Locus tag
AURANDRAFT_53568
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Aureococcus anophagefferens (strain: CCMP1984)
Lineage
Eukaryota; Stramenopiles; Pelagophyceae; Pelagomonadales; Aureococcus
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Genomic context

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Location:
chromosome: Unknown
Exon count:
4

NW_008705568.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008705568.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics. Gobler CJ, et al. Proc Natl Acad Sci U S A, 2011 Mar 15. PMID 21368207, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_008705568.1 Reference assembly

    Range
    1204017..1207263 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009038476.1 → XP_009036724.1  hypothetical protein AURANDRAFT_53568 [Aureococcus anophagefferens]

    See identical proteins and their annotated locations for XP_009036724.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    F0Y8C5
    Conserved Domains (3) summary
    cd03788
    Location:15 → 376
    GT1_TPS; Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a ...
    TIGR01484
    Location:407 → 609
    HAD-SF-IIB; HAD-superfamily hydrolase, subfamily IIB
    cl21460
    Location:410 → 637
    HAD_like; Haloacid Dehalogenase-like Hydrolases
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases