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ELK2AP ETS transcription factor ELK2A, pseudogene [ Homo sapiens (human) ]

Gene ID: 2003, updated on 17-Sep-2024

Summary

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Official Symbol
ELK2APprovided by HGNC
Official Full Name
ETS transcription factor ELK2A, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:3323
See related
AllianceGenome:HGNC:3323
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ELK2; ELK2.1; ELK2P1
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Genomic context

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See ELK2AP in Genome Data Viewer
Location:
14q32.33
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (105669577..105672807, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (99941971..99945201, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (106135914..106139144, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene microRNA 8071-2 Neighboring gene immunoglobulin heavy locus Neighboring gene immunoglobulin heavy constant gamma 2 (G2m marker) Neighboring gene immunoglobulin heavy constant gamma P (non-functional) Neighboring gene immunoglobulin heavy constant epsilon P1 (pseudogene) Neighboring gene immunoglobulin heavy constant alpha 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Structural organization of the human Elk1 gene and its processed pseudogene Elk2. Yamauchi T, et al. DNA Res, 1999 Feb 26. PMID 10231026
  2. The human elk-1 gene family: the functional gene and two processed pseudogenes embedded in the IgH locus. Harindranath N, et al. Gene, 1998 Oct 23. PMID 9795224
  3. Locations of the ets subfamily members net, elk1, and sap1 (ELK3, ELK1, and ELK4) on three homologous regions of the mouse and human genomes. Giovane A, et al. Genomics, 1995 Oct 10. PMID 8575773
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • ELK1, member of ETS oncogene family pseudogene
  • ELK2, member of ETS oncogene family, pseudogene 1
  • ELK2A, member of ETS oncogene family, pseudogene

Clone Names

  • MGC39713

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_001019.6 

    Range
    1207538..1210768
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_046211.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL928769

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    105669577..105672807 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187600.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    137346..140576 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    99941971..99945201 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_001114.1: Suppressed sequence

    Description
    NG_001114.1: This RefSeq was permanently suppressed because this gene is now included in the immunoglobulin heavy locus on chromosome 14.
Nucleotide Protein
Heading Accession and Version

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