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Snord3b1 small nucleolar RNA, C/D box 3B1 [ Mus musculus (house mouse) ]

Gene ID: 19858, updated on 17-Aug-2024

Summary

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Official Symbol
Snord3b1provided by MGI
Official Full Name
small nucleolar RNA, C/D box 3B1provided by MGI
Primary source
MGI:MGI:97985
See related
Ensembl:ENSMUSG00000119262 AllianceGenome:MGI:97985
Gene type
snRNA
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rnu3b1; Rnu3b-1
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Genomic context

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See Snord3b1 in Genome Data Viewer
Location:
11 C; 11 52.1 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (87334063..87334277)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (87443237..87443451)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene testis expressed gene 14 intercellular bridge forming factor Neighboring gene VISTA enhancer mm264 Neighboring gene STARR-positive B cell enhancer mm9_chr11:87239792-87240093 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:87240340-87240523 Neighboring gene U1a1 small nuclear RNA Neighboring gene predicted gene, 22068 Neighboring gene STARR-positive B cell enhancer ABC_E3990 Neighboring gene STARR-positive B cell enhancer mm9_chr11:87257185-87257486 Neighboring gene STARR-positive B cell enhancer mm9_chr11:87261696-87261996 Neighboring gene STARR-positive B cell enhancer mm9_chr11:87262254-87262555 Neighboring gene predicted gene, 57580 Neighboring gene predicted gene, 23137 Neighboring gene small nucleolar RNA, C/D box 3B3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structure and organization of mouse U3B RNA functional genes. Mazan S, et al. J Biol Chem, 1988 Dec 25. PMID 3198636
  2. Organization of the gene family encoding mouse U3B RNA: role of gene conversions in its concerted evolution. Mazan S, et al. Gene, 1990 Oct 15. PMID 2258057
  3. Composition and chromosomal localization of the small multigene family encoding mouse U3B nucleolar RNA. Mazan S, et al. Cytogenet Cell Genet, 1991. PMID 2004550

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • U3B small nuclear RNA 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_004415.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    M23705
    Related
    ENSMUST00000240253.1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    87334063..87334277
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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