srrt serrate RNA effector molecule homolog (Arabidopsis) [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: srrtprovided by ZNC
Official Full Name: serrate RNA effector molecule homolog (Arabidopsis)provided by ZNC
Primary source: ZFIN:ZDB-GENE-020419-13
See related: Ensembl:ENSDARG00000017762 AllianceGenome:ZFIN:ZDB-GENE-020419-13
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: ars2; CHUNP6881; zgc:92060
Summary: Predicted to be involved in primary miRNA processing. Predicted to act upstream of or within mRNA processing and regulatory ncRNA-mediated gene silencing. Predicted to be located in cytoplasm and nucleoplasm. Predicted to be active in nuclear body. Orthologous to human SRRT (serrate, RNA effector molecule). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 5

Exon count:: 20

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	5	NC_007116.7 (4253929..4297481, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	5	NC_007116.6 (3920894..3964446, complement)

Chromosome 5 - NC_007116.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Markers

fb80f06.x1 (e-PCR)
- UniSTS:191570

fb80f06.x1 (e-PCR)
- UniSTS:191571

Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within mRNA processing	IEA Inferred from Electronic Annotation more info
involved_in primary miRNA processing	IBA Inferred from Biological aspect of Ancestor more info
involved_in primary miRNA processing	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within regulatory ncRNA-mediated gene silencing	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytoplasm	ISS Inferred from Sequence or Structural Similarity more info
is_active_in nuclear body	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleoplasm	ISS Inferred from Sequence or Structural Similarity more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

Go to the top of the page Help

Preferred Names: serrate RNA effector molecule homolog

Names: arsenate resistance protein 2; arsenite-resistance protein 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.