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LOC18994302 polygalacturonase [ Eutrema salsugineum ]

Gene ID: 18994302, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18994302
Gene description
polygalacturonase
Locus tag
EUTSA_v10007830mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Eutrema salsugineum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Genomic context

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See LOC18994302 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Eutsalg1_0 (GCF_000478725.1) Unplaced Scaffold NW_006256612.1 (13917998..13919984)

NW_006256612.1Genomic Context describing neighboring genes Neighboring gene BTB/POZ and TAZ domain-containing protein 3 Neighboring gene pentatricopeptide repeat-containing protein At1g05670, mitochondrial Neighboring gene type I inositol polyphosphate 5-phosphatase 13 Neighboring gene probable uridine nucleosidase 2 Neighboring gene putative B3 domain-containing protein At1g05615

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006256612 Unplaced Scaffold Reference Eutsalg1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polygalacturonase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eutrema salsugineum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Eutsalg1_0

Genomic

  1. NW_006256612.1 Reference Eutsalg1_0

    Range
    13917998..13919984
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006417937.2 → XP_006418000.1  polygalacturonase

    See identical proteins and their annotated locations for XP_006418000.1

    UniProtKB/TrEMBL
    V4L999
    Conserved Domains (2) summary
    pfam00295
    Location:56 → 370
    Glyco_hydro_28; Glycosyl hydrolases family 28
    cl19188
    Location:1 → 395
    PL-6; Polysaccharide Lyase Family 6
Nucleotide Protein
Heading Accession and Version

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