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LOC18993823 probable xyloglucan endotransglucosylase/hydrolase protein 33 [ Eutrema salsugineum ]

Gene ID: 18993823, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18993823
Gene description
probable xyloglucan endotransglucosylase/hydrolase protein 33
Locus tag
EUTSA_v10008234mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Eutrema salsugineum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Genomic context

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See LOC18993823 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Eutsalg1_0 (GCF_000478725.1) Unplaced Scaffold NW_006256612.1 (12099048..12101149)

NW_006256612.1Genomic Context describing neighboring genes Neighboring gene pre-mRNA-processing factor 17 Neighboring gene ubiquitin-like-specific protease 1C Neighboring gene nucleobase-ascorbate transporter 8 Neighboring gene uncharacterized LOC18993825

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006256612 Unplaced Scaffold Reference Eutsalg1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xyloglucan:xyloglucosyl transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable xyloglucan endotransglucosylase/hydrolase protein 33

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eutrema salsugineum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Eutsalg1_0

Genomic

  1. NW_006256612.1 Reference Eutsalg1_0

    Range
    12099048..12101149
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006417390.2 → XP_006417453.1  probable xyloglucan endotransglucosylase/hydrolase protein 33

    See identical proteins and their annotated locations for XP_006417453.1

    UniProtKB/TrEMBL
    V4MUT3
    Conserved Domains (2) summary
    PLN03161
    Location:46 → 318
    PLN03161; Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
    cd02176
    Location:46 → 317
    GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16
Nucleotide Protein
Heading Accession and Version

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