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LOC18992629 mediator of RNA polymerase II transcription subunit 23 [ Eutrema salsugineum ]

Gene ID: 18992629, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18992629
Gene description
mediator of RNA polymerase II transcription subunit 23
Locus tag
EUTSA_v10006548mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Eutrema salsugineum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Genomic context

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See LOC18992629 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current Eutsalg1_0 (GCF_000478725.1) Unplaced Scaffold NW_006256612.1 (7186861..7194520, complement)

NW_006256612.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme E2 variant 1A Neighboring gene probable peroxygenase 7 Neighboring gene dynein light chain 1, cytoplasmic Neighboring gene endoglucanase 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006256612 Unplaced Scaffold Reference Eutsalg1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mediator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mediator of RNA polymerase II transcription subunit 23

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eutrema salsugineum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Eutsalg1_0

Genomic

  1. NW_006256612.1 Reference Eutsalg1_0

    Range
    7186861..7194520 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024152083.1 → XP_024007851.1  mediator of RNA polymerase II transcription subunit 23 isoform X1

    UniProtKB/TrEMBL
    V4KWP5
    Conserved Domains (1) summary
    pfam11573
    Location:662 → 1292
    Med23; Mediator complex subunit 23

  2. XM_024152084.1 → XP_024007852.1  mediator of RNA polymerase II transcription subunit 23 isoform X2

    UniProtKB/TrEMBL
    V4KWP5
    Conserved Domains (1) summary
    pfam11573
    Location:662 → 1288
    Med23; Mediator complex subunit 23
Nucleotide Protein
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