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LOC18992534 hydroxyproline O-galactosyltransferase GALT4 [ Eutrema salsugineum ]

Gene ID: 18992534, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18992534
Gene description
hydroxyproline O-galactosyltransferase GALT4
Locus tag
EUTSA_v10006986mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Eutrema salsugineum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Genomic context

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See LOC18992534 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current Eutsalg1_0 (GCF_000478725.1) Unplaced Scaffold NW_006256612.1 (6758843..6762013)

NW_006256612.1Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat protein 38 Neighboring gene MLP-like protein 34 Neighboring gene glutathione S-transferase U13 Neighboring gene tetratricopeptide repeat protein 38 Neighboring gene valine--tRNA ligase, mitochondrial 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006256612 Unplaced Scaffold Reference Eutsalg1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase GALT4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eutrema salsugineum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Eutsalg1_0

Genomic

  1. NW_006256612.1 Reference Eutsalg1_0

    Range
    6758843..6762013
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006415942.2 → XP_006416005.1  hydroxyproline O-galactosyltransferase GALT4

    See identical proteins and their annotated locations for XP_006416005.1

    UniProtKB/TrEMBL
    V4L3M8
    Conserved Domains (2) summary
    pfam00337
    Location:189 → 397
    Gal-bind_lectin; Galactoside-binding lectin
    cl21608
    Location:445 → 625
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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