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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001347440.1 → NP_001334369.1 poly(A) polymerase alpha isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 3' coding region compared to variant 1. The encoded isoform (2) has the same N- and C-termini, but is shorter than isoform 1.
- Source sequence(s)
-
AC158526, AK132704, BC060128, BU056874, BY308303, CF167932, CX200364
- Consensus CDS
-
CCDS84000.1
- UniProtKB/TrEMBL
- E9PWC8, E9PZR3
- Related
- ENSMUSP00000126275.2, ENSMUST00000170002.8
- Conserved Domains (3) summary
-
- PRK12799
Location:501 → 647
- motB; flagellar motor protein MotB; Reviewed
- pfam04926
Location:366 → 495
- PAP_RNA-bind; Poly(A) polymerase predicted RNA binding domain
- pfam04928
Location:21 → 363
- PAP_central; Poly(A) polymerase central domain
-
NM_001422901.1 → NP_001409830.1 poly(A) polymerase alpha isoform 3
Status: VALIDATED
- Source sequence(s)
-
AC144543, AC158526
-
NM_011112.4 → NP_035242.1 poly(A) polymerase alpha isoform 1
See identical proteins and their annotated locations for NP_035242.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
- Source sequence(s)
-
AC158526, AK132704, BC060128, BU056874, BY308303, CX200364
- Consensus CDS
-
CCDS49163.1
- UniProtKB/Swiss-Prot
- Q61183, Q61208, Q61209, Q8K4X2
- UniProtKB/TrEMBL
-
Q3V141
- Related
- ENSMUSP00000105527.3, ENSMUST00000109901.9
- Conserved Domains (3) summary
-
- pfam04926
Location:366 → 495
- PAP_RNA-bind; Poly(A) polymerase predicted RNA binding domain
- pfam04928
Location:21 → 363
- PAP_central; Poly(A) polymerase central domain
- cl25496
Location:530 → 725
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
RNA
-
NR_186615.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC144543, AC158526
- Related
-
ENSMUST00000169938.8
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000078.7 Reference GRCm39 C57BL/6J
- Range
-
105750926..105805208
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017314994.3 → XP_017170483.1 poly(A) polymerase alpha isoform X7
- UniProtKB/TrEMBL
-
E9PWC8
- Conserved Domains (3) summary
-
- PRK12799
Location:501 → 646
- motB; flagellar motor protein MotB; Reviewed
- pfam04926
Location:366 → 495
- PAP_RNA-bind; Poly(A) polymerase predicted RNA binding domain
- pfam04928
Location:21 → 363
- PAP_central; Poly(A) polymerase central domain
-
XM_017314992.3 → XP_017170481.1 poly(A) polymerase alpha isoform X2
- UniProtKB/TrEMBL
-
Q3V141
- Conserved Domains (3) summary
-
- PRK12799
Location:501 → 646
- motB; flagellar motor protein MotB; Reviewed
- pfam04926
Location:366 → 495
- PAP_RNA-bind; Poly(A) polymerase predicted RNA binding domain
- pfam04928
Location:21 → 363
- PAP_central; Poly(A) polymerase central domain
-
XM_036157252.1 → XP_036013145.1 poly(A) polymerase alpha isoform X11
- UniProtKB/TrEMBL
-
F6VTN8
- Conserved Domains (3) summary
-
- PRK12799
Location:251 → 397
- motB; flagellar motor protein MotB; Reviewed
- PTZ00418
Location:1 → 317
- PTZ00418; Poly(A) polymerase; Provisional
- cl11966
Location:1 → 113
- NT_Pol-beta-like; Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins
-
XM_030246613.1 → XP_030102473.1 poly(A) polymerase alpha isoform X12
- UniProtKB/TrEMBL
-
F6VTN8
- Related
- ENSMUSP00000132353.2, ENSMUST00000166471.8
- Conserved Domains (2) summary
-
- PRK12799
Location:205 → 345
- motB; flagellar motor protein MotB; Reviewed
- PTZ00418
Location:2 → 265
- PTZ00418; Poly(A) polymerase; Provisional
-
XM_036157253.1 → XP_036013146.1 poly(A) polymerase alpha isoform X13
- UniProtKB/TrEMBL
-
F6VTN8
- Conserved Domains (2) summary
-
- PRK12799
Location:205 → 345
- motB; flagellar motor protein MotB; Reviewed
- PTZ00418
Location:2 → 265
- PTZ00418; Poly(A) polymerase; Provisional
-
XM_006515596.4 → XP_006515659.1 poly(A) polymerase alpha isoform X9
- UniProtKB/TrEMBL
-
Q3V141
- Conserved Domains (3) summary
-
- pfam05109
Location:544 → 739
- Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
- pfam04926
Location:380 → 509
- PAP_RNA-bind; Poly(A) polymerase predicted RNA binding domain
- pfam04928
Location:35 → 377
- PAP_central; Poly(A) polymerase central domain
-
XM_030246611.2 → XP_030102471.1 poly(A) polymerase alpha isoform X4
- UniProtKB/TrEMBL
-
E9PWC8
- Conserved Domains (3) summary
-
- PRK12799
Location:515 → 660
- motB; flagellar motor protein MotB; Reviewed
- pfam04926
Location:380 → 509
- PAP_RNA-bind; Poly(A) polymerase predicted RNA binding domain
- pfam04928
Location:35 → 377
- PAP_central; Poly(A) polymerase central domain
-
XM_006515594.4 → XP_006515657.1 poly(A) polymerase alpha isoform X5
- UniProtKB/TrEMBL
-
E9QAN2
- Conserved Domains (3) summary
-
- PRK12799
Location:515 → 661
- motB; flagellar motor protein MotB; Reviewed
- pfam04926
Location:380 → 509
- PAP_RNA-bind; Poly(A) polymerase predicted RNA binding domain
- pfam04928
Location:35 → 377
- PAP_central; Poly(A) polymerase central domain
-
XM_030246612.2 → XP_030102472.1 poly(A) polymerase alpha isoform X6
- UniProtKB/TrEMBL
-
E9QAN2
- Conserved Domains (3) summary
-
- PRK12799
Location:515 → 660
- motB; flagellar motor protein MotB; Reviewed
- pfam04926
Location:380 → 509
- PAP_RNA-bind; Poly(A) polymerase predicted RNA binding domain
- pfam04928
Location:35 → 377
- PAP_central; Poly(A) polymerase central domain
-
XM_006515593.5 → XP_006515656.1 poly(A) polymerase alpha isoform X3
- UniProtKB/TrEMBL
-
E9PWC8
- Conserved Domains (3) summary
-
- PRK12799
Location:515 → 661
- motB; flagellar motor protein MotB; Reviewed
- pfam04926
Location:380 → 509
- PAP_RNA-bind; Poly(A) polymerase predicted RNA binding domain
- pfam04928
Location:35 → 377
- PAP_central; Poly(A) polymerase central domain
-
XM_006515592.4 → XP_006515655.1 poly(A) polymerase alpha isoform X1
- UniProtKB/TrEMBL
-
Q3V141
- Conserved Domains (3) summary
-
- PRK12799
Location:515 → 660
- motB; flagellar motor protein MotB; Reviewed
- pfam04926
Location:380 → 509
- PAP_RNA-bind; Poly(A) polymerase predicted RNA binding domain
- pfam04928
Location:35 → 377
- PAP_central; Poly(A) polymerase central domain
-
XM_006515595.4 → XP_006515658.1 poly(A) polymerase alpha isoform X8
- UniProtKB/TrEMBL
-
E9QAN2
- Conserved Domains (3) summary
-
- PRK12799
Location:515 → 661
- motB; flagellar motor protein MotB; Reviewed
- pfam04926
Location:380 → 509
- PAP_RNA-bind; Poly(A) polymerase predicted RNA binding domain
- pfam04928
Location:35 → 377
- PAP_central; Poly(A) polymerase central domain
RNA
-
XR_003949999.2 RNA Sequence