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LOC18783633 agamous-like MADS-box protein AGL1 [ Prunus persica (peach) ]

Gene ID: 18783633, updated on 9-Nov-2023

Summary

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Gene symbol
LOC18783633
Gene description
agamous-like MADS-box protein AGL1
Locus tag
PRUPE_3G170600
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus persica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Also known as
SHP; MADS8
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Genomic context

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See LOC18783633 in Genome Data Viewer
Location:
chromosome: G3
Exon count:
9
Annotation release Status Assembly Chr Location
100 current Prunus_persica_NCBIv2 (GCF_000346465.2) G3 NC_034011.1 (18936103..18943202)

Chromosome G3 - NC_034011.1Genomic Context describing neighboring genes Neighboring gene HVA22-like protein f Neighboring gene zinc finger BED domain-containing protein RICESLEEPER 1 Neighboring gene probable galacturonosyltransferase 15 Neighboring gene trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034011.1 Chromosome G3 Reference Prunus_persica_NCBIv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization and expression analysis of FRUITFULL- and SHATTERPROOF-like genes from peach (Prunus persica) and their role in split-pit formation. Tani E, et al. Tree Physiol, 2007 May. PMID 17267356
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
agamous-like MADS-box protein AGL1
Names
PLENA-like MADS-box protein
SHATTERPROOF-like
SHATTERPROOF-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus persica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Prunus_persica_NCBIv2 Primary Assembly

Genomic

  1. NC_034011.1 Reference Prunus_persica_NCBIv2 Primary Assembly

    Range
    18936103..18943202
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020559281.1 → XP_020414870.1  agamous-like MADS-box protein AGL1

    UniProtKB/TrEMBL
    Q0GPY8
    Conserved Domains (2) summary
    cd00265
    Location:17 → 91
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:103 → 185
    K-box; K-box region

  2. XM_007217202.2 → XP_007217264.1  agamous-like MADS-box protein AGL1

    See identical proteins and their annotated locations for XP_007217264.1

    UniProtKB/TrEMBL
    Q0GPY8
    Conserved Domains (2) summary
    cd00265
    Location:17 → 91
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:103 → 185
    K-box; K-box region
Nucleotide Protein Strain
Heading Accession and Version

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