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LOC18775030 alpha-glucan phosphorylase, H isozyme [ Prunus persica (peach) ]

Gene ID: 18775030, updated on 9-Nov-2023

Summary

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Gene symbol
LOC18775030
Gene description
alpha-glucan phosphorylase, H isozyme
Locus tag
PRUPE_6G062600
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus persica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Genomic context

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See LOC18775030 in Genome Data Viewer
Location:
chromosome: G6
Exon count:
16
Annotation release Status Assembly Chr Location
100 current Prunus_persica_NCBIv2 (GCF_000346465.2) G6 NC_034014.1 (4324187..4330695)

Chromosome G6 - NC_034014.1Genomic Context describing neighboring genes Neighboring gene probable anion transporter 4, chloroplastic Neighboring gene calmodulin-binding receptor-like cytoplasmic kinase 2 Neighboring gene arginine/serine-rich protein 1-like Neighboring gene serine/arginine-rich splicing factor SR45a Neighboring gene DExH-box ATP-dependent RNA helicase DExH11

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034014.1 Chromosome G6 Reference Prunus_persica_NCBIv2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycogen phosphorylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-glucan phosphorylase, H isozyme

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus persica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Prunus_persica_NCBIv2 Primary Assembly

Genomic

  1. NC_034014.1 Reference Prunus_persica_NCBIv2 Primary Assembly

    Range
    4324187..4330695
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007208342.2 → XP_007208404.1  alpha-glucan phosphorylase, H isozyme

    See identical proteins and their annotated locations for XP_007208404.1

    UniProtKB/TrEMBL
    M5WK36
    Conserved Domains (1) summary
    cd04300
    Location:36 → 840
    GT1_Glycogen_Phosphorylase; This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of ...
Nucleotide Protein Strain
Heading Accession and Version

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